Variant report

Variant	rs12253046
Chromosome Location	chr10:110807122-110807123
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11194350	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194351	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194352	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194353	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194387	1.00[AMR][1000 genomes]
rs11194390	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194398	1.00[AMR][1000 genomes]
rs12241065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241218	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242168	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243514	1.00[AMR][1000 genomes]
rs12245283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250675	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253337	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256587	1.00[AMR][1000 genomes]
rs12258896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264452	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28771205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58755187	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60538078	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60992446	1.00[AMR][1000 genomes]
rs7091244	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344572	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354851	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354855	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354856	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354858	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354859	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354860	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354861	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354867	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354870	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv895993	chr10:110639267-110814528	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv895994	chr10:110702426-110982703	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv895995	chr10:110702426-111348202	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv895996	chr10:110739765-110991026	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1048918	chr10:110757671-110823083	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv895997	chr10:110761477-110863795	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110800800-110807600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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