Variant report

Variant	rs11194390
Chromosome Location	chr10:110848303-110848304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11194350	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194351	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194352	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194353	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194357	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194358	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194359	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194360	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194361	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194375	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194376	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194387	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11194398	1.00[AMR][1000 genomes]
rs12241065	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241218	1.00[AMR][1000 genomes]
rs12242168	1.00[AMR][1000 genomes]
rs12243514	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245283	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250682	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251125	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251602	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253046	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253337	1.00[AMR][1000 genomes]
rs12254763	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256587	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258896	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264452	1.00[AMR][1000 genomes]
rs12264957	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28771205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58755187	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60538078	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60992446	1.00[AMR][1000 genomes]
rs7091244	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342418	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342447	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342450	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342454	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342455	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342457	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342460	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342462	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354851	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354855	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354856	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354858	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354859	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354860	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354861	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354867	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv895994	chr10:110702426-110982703	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv895995	chr10:110702426-111348202	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv895996	chr10:110739765-110991026	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv895997	chr10:110761477-110863795	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2761625	chr10:110809519-110977245	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1036870	chr10:110818324-110980456	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv895998	chr10:110830862-111041310	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv895999	chr10:110833523-111041310	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110845800-110848600	Weak transcription	Pancreas	Pancrea

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