Variant report

Variant	rs11195391
Chromosome Location	chr10:112720152-112720153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr10:112720142-112720368	K562	blood:	n/a	n/a

Variant related genes	Relation type
SHOC2	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10082499	0.80[AFR][1000 genomes]
rs10787286	1.00[JPT][hapmap]
rs10787291	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10787293	0.86[AFR][1000 genomes]
rs10787299	0.88[AFR][1000 genomes]
rs10885059	1.00[JPT][hapmap]
rs10885064	0.80[AFR][1000 genomes]
rs10885071	0.86[AFR][1000 genomes]
rs10885073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11195366	0.85[AFR][1000 genomes]
rs11195381	0.85[AFR][1000 genomes]
rs11195387	0.80[AFR][1000 genomes]
rs11195390	0.80[AFR][1000 genomes]
rs11195398	0.91[AFR][1000 genomes]
rs12242177	0.84[AFR][1000 genomes]
rs12242928	0.84[AFR][1000 genomes]
rs12246561	0.82[CEU][hapmap];0.80[AFR][1000 genomes]
rs12249031	0.80[AFR][1000 genomes]
rs12253351	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12258559	0.81[AFR][1000 genomes]
rs12776359	0.80[AFR][1000 genomes]
rs12783690	1.00[JPT][hapmap]
rs17186196	0.85[AFR][1000 genomes]
rs2146544	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3750619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes]
rs4917589	1.00[JPT][hapmap]
rs61864641	0.85[AFR][1000 genomes]
rs7070962	0.86[AFR][1000 genomes]
rs7074629	0.80[AFR][1000 genomes]
rs7074653	0.97[AFR][1000 genomes]
rs7089069	0.97[AFR][1000 genomes]
rs7089687	1.00[JPT][hapmap]
rs7096359	0.82[CEU][hapmap];0.80[AFR][1000 genomes]
rs7919142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9663346	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112682000-112732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:112692000-112722000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr10:112692400-112724000	Weak transcription	Stomach Mucosa	stomach
4	chr10:112692600-112732400	Weak transcription	Fetal Intestine Large	intestine
5	chr10:112693600-112722000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:112695400-112722400	Weak transcription	Colonic Mucosa	Colon
7	chr10:112697200-112720400	Weak transcription	Ovary	ovary
8	chr10:112697200-112740200	Weak transcription	Thymus	Thymus
9	chr10:112697200-112745400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:112698000-112724000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:112700600-112764000	Weak transcription	Placenta	Placenta
12	chr10:112701200-112726800	Weak transcription	Dnd41	blood
13	chr10:112702200-112722000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:112702400-112754800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:112703600-112721400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:112703800-112720800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:112703800-112724200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:112703800-112725800	Weak transcription	HUVEC	blood vessel
19	chr10:112703800-112729000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:112705200-112789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:112705400-112721200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:112705800-112725400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:112707200-112724000	Weak transcription	Right Ventricle	heart
24	chr10:112707200-112724200	Weak transcription	Gastric	stomach
25	chr10:112707200-112724400	Weak transcription	Aorta	Aorta
26	chr10:112707200-112725400	Weak transcription	Osteobl	bone
27	chr10:112707200-112726200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:112707200-112732200	Weak transcription	Pancreas	Pancrea
29	chr10:112707200-112732200	Weak transcription	NHEK	skin
30	chr10:112707200-112732400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:112707200-112737600	Weak transcription	Psoas Muscle	Psoas
32	chr10:112707200-112738800	Weak transcription	NH-A	brain
33	chr10:112707200-112755000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:112707200-112784200	Weak transcription	Left Ventricle	heart
35	chr10:112709000-112724400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr10:112709000-112760000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:112709600-112721400	Weak transcription	Brain Germinal Matrix	brain
38	chr10:112710000-112736400	Weak transcription	HSMM	muscle
39	chr10:112711800-112735600	Weak transcription	Fetal Intestine Small	intestine
40	chr10:112712200-112725400	Weak transcription	NHLF	lung
41	chr10:112712200-112732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:112712400-112721400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:112712600-112723400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:112712600-112723800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:112712600-112724400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:112712600-112726400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:112712600-112732400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:112712600-112732400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr10:112712600-112732400	Weak transcription	Esophagus	oesophagus
50	chr10:112712600-112737200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links