Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10787293	0.83[AFR][1000 genomes]
rs10787299	0.86[AFR][1000 genomes]
rs10885071	0.83[AFR][1000 genomes]
rs10885073	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11195366	0.82[AFR][1000 genomes]
rs11195381	0.82[AFR][1000 genomes]
rs11195391	0.97[AFR][1000 genomes]
rs11195398	0.88[AFR][1000 genomes]
rs12242177	0.81[AFR][1000 genomes]
rs12242928	0.81[AFR][1000 genomes]
rs12246561	0.83[AFR][1000 genomes]
rs12249031	0.83[AFR][1000 genomes]
rs12253351	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17186196	0.88[AFR][1000 genomes]
rs2146544	0.82[AFR][1000 genomes]
rs3750619	0.82[AFR][1000 genomes]
rs61864641	0.88[AFR][1000 genomes]
rs7070962	0.83[AFR][1000 genomes]
rs7074629	0.83[AFR][1000 genomes]
rs7089069	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7096359	0.83[AFR][1000 genomes]
rs7919142	0.82[AFR][1000 genomes]
rs9663346	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112829800-112835600	Weak transcription	Pancreas	Pancrea
2	chr10:112831400-112835600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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