Variant report

Variant	rs12253351
Chromosome Location	chr10:112816553-112816554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082499	0.80[AFR][1000 genomes]
rs10787286	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10787291	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10787293	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10787299	0.88[AFR][1000 genomes]
rs10885059	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10885064	0.80[AFR][1000 genomes]
rs10885071	0.86[AFR][1000 genomes]
rs10885073	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11195366	0.85[AFR][1000 genomes]
rs11195381	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11195387	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11195390	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs11195391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11195398	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12242177	0.84[AFR][1000 genomes]
rs12242928	0.84[AFR][1000 genomes]
rs12246561	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs12249031	0.80[AFR][1000 genomes]
rs12258559	0.81[AFR][1000 genomes]
rs12776359	0.80[AFR][1000 genomes]
rs17186196	0.85[AFR][1000 genomes]
rs2146544	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs3750619	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs61864641	0.85[AFR][1000 genomes]
rs7070962	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7074629	0.80[AFR][1000 genomes]
rs7074653	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7089069	0.97[AFR][1000 genomes]
rs7089687	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7096359	0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs7919142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes]
rs9663346	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112813200-112817000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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