Variant report

Variant	rs11196766
Chromosome Location	chr10:116259737-116259738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116259184..116261676-chr10:116284926..116286674,2	MCF-7	breast:
2	chr10:116255855..116258207-chr10:116259480..116261802,2	MCF-7	breast:
3	chr10:116246183..116247727-chr10:116258173..116260732,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11196753	0.82[AMR][1000 genomes]
rs11196758	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11196764	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11196768	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2475224	1.00[CEU][hapmap];0.85[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2475225	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2475227	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2497679	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2497688	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2497702	0.86[ASN][1000 genomes]
rs2497706	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs34374858	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3802737	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7912323	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs941852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9421175	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:116222200-116264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:116225000-116267200	Weak transcription	Aorta	Aorta
4	chr10:116225600-116278800	Weak transcription	HSMM	muscle
5	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
6	chr10:116249600-116264800	Weak transcription	Pancreas	Pancrea
7	chr10:116250200-116264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:116250200-116265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:116252000-116267200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:116252200-116264800	Weak transcription	Brain Substantia Nigra	brain
11	chr10:116252400-116263800	Weak transcription	Hela-S3	cervix
12	chr10:116252600-116262800	Weak transcription	Psoas Muscle	Psoas
13	chr10:116252600-116264800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:116252600-116264800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:116252600-116264800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:116253200-116264600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:116253200-116264800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:116255400-116263000	Weak transcription	Fetal Lung	lung
19	chr10:116255400-116264200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:116255400-116264600	Weak transcription	Fetal Kidney	kidney
21	chr10:116255800-116259800	Weak transcription	HepG2	liver
22	chr10:116255800-116262600	Weak transcription	Fetal Heart	heart
23	chr10:116256000-116264600	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:116256800-116263600	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:116256800-116264600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:116256800-116264800	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:116257600-116260000	Flanking Active TSS	GM12878-XiMat	blood
28	chr10:116257600-116260400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr10:116257800-116260600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr10:116258000-116260400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:116258000-116261800	Enhancers	Small Intestine	intestine
32	chr10:116258000-116271400	Enhancers	Stomach Mucosa	stomach
33	chr10:116258200-116260000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:116258200-116261200	Enhancers	Fetal Intestine Large	intestine
35	chr10:116258200-116263200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr10:116258400-116260000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:116258400-116260400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr10:116258400-116261000	Enhancers	Fetal Intestine Small	intestine
39	chr10:116258600-116259800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:116258600-116260000	Genic enhancers	Right Ventricle	heart
41	chr10:116258600-116260800	Enhancers	Duodenum Mucosa	Duodenum
42	chr10:116258600-116261000	Enhancers	HMEC	breast
43	chr10:116258600-116261200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr10:116258600-116261200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr10:116258800-116259800	Flanking Active TSS	Primary T cells from cord blood	blood
46	chr10:116258800-116259800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr10:116258800-116260000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr10:116258800-116260200	Enhancers	Fetal Thymus	thymus
49	chr10:116258800-116260400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:116258800-116260800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links