Variant report

Variant	rs941852
Chromosome Location	chr10:116275097-116275098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116274510..116277098-chr10:116279829..116282526,2	MCF-7	breast:
2	chr10:116262150..116264376-chr10:116274849..116277700,2	MCF-7	breast:
3	chr10:116272257..116274312-chr10:116275084..116277000,2	K562	blood:
4	chr10:116273581..116276138-chr10:116276360..116278547,3	MCF-7	breast:
5	chr10:116271430..116273039-chr10:116273983..116275755,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11196758	0.84[AMR][1000 genomes]
rs11196764	0.82[CHD][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes]
rs11196766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11196768	0.81[CEU][hapmap]
rs1923285	0.86[MEX][hapmap]
rs2475224	1.00[ASW][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2475225	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2475227	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2475230	0.83[MEX][hapmap]
rs2497679	0.84[AMR][1000 genomes]
rs2497688	0.84[AMR][1000 genomes]
rs2497706	0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs3802737	0.81[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116225600-116278800	Weak transcription	HSMM	muscle
2	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
3	chr10:116259800-116276800	Weak transcription	Thymus	Thymus
4	chr10:116261200-116279400	Weak transcription	GM12878-XiMat	blood
5	chr10:116265400-116279400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:116265600-116275200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:116266000-116276600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:116267600-116278800	Weak transcription	Colonic Mucosa	Colon
9	chr10:116267600-116279200	Weak transcription	Aorta	Aorta
10	chr10:116267800-116278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:116268000-116277600	Weak transcription	A549	lung
12	chr10:116268000-116278800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:116268200-116276200	Weak transcription	Brain Substantia Nigra	brain
14	chr10:116268200-116276600	Weak transcription	Fetal Stomach	stomach
15	chr10:116268200-116278800	Weak transcription	Fetal Intestine Large	intestine
16	chr10:116268200-116281600	Weak transcription	Brain Anterior Caudate	brain
17	chr10:116268400-116276800	Weak transcription	Fetal Intestine Small	intestine
18	chr10:116268400-116277000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:116268600-116277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:116269000-116276400	Weak transcription	Adipose Nuclei	Adipose
21	chr10:116269000-116278000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:116269200-116278800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:116269400-116275200	Weak transcription	Lung	lung
24	chr10:116269600-116275400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:116269600-116276200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:116269800-116275400	Weak transcription	Primary B cells from cord blood	blood
27	chr10:116270600-116283000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:116271600-116276400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:116271800-116275200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:116271800-116277000	Enhancers	Stomach Mucosa	stomach
31	chr10:116272000-116280000	Weak transcription	HUVEC	blood vessel
32	chr10:116272200-116275200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:116272200-116276800	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:116272200-116277200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr10:116272200-116277800	Weak transcription	Hela-S3	cervix
36	chr10:116272200-116278000	Weak transcription	NHEK	skin
37	chr10:116272200-116278600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:116272200-116278800	Weak transcription	HSMMtube	muscle
39	chr10:116272800-116275600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:116272800-116276400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr10:116273200-116275800	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr10:116273200-116275800	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr10:116273200-116277800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:116273400-116275200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr10:116273400-116276200	Enhancers	Left Ventricle	heart
46	chr10:116273400-116277400	Enhancers	Right Ventricle	heart
47	chr10:116273400-116280400	Enhancers	Fetal Heart	heart
48	chr10:116273600-116278800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:116273600-116279000	Weak transcription	Pancreas	Pancrea
50	chr10:116273800-116275200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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