Variant report

Variant	rs11196785
Chromosome Location	chr10:116308771-116308772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:116062527..116065028-chr10:116306481..116309077,3	MCF-7	breast:
2	chr10:116302698..116304630-chr10:116307887..116309527,2	MCF-7	breast:
3	chr10:116063588..116064317-chr10:116308286..116308876,2	K562	blood:
4	chr10:116230461..116232413-chr10:116308199..116309115,10	MCF-7	breast:
5	chr10:116278426..116280614-chr10:116307779..116309326,2	MCF-7	breast:
6	chr10:116063446..116064411-chr10:116308274..116309084,3	MCF-7	breast:
7	chr10:116230855..116231707-chr10:116308268..116308773,2	MCF-7	breast:
8	chr10:116063714..116064368-chr10:116308268..116309199,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169129	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10160023	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10749169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749170	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885572	0.94[JPT][hapmap]
rs10885575	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10885580	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885584	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11196780	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11196781	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11196791	0.80[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12218378	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12241422	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569428	0.94[JPT][hapmap]
rs2145894	0.82[JPT][hapmap]
rs2247528	0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2247624	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2483531	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2483571	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs2483585	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2483587	0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2483588	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2483595	0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2483596	0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2483599	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2483612	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2497717	0.83[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2497718	0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2497719	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2497720	0.82[ASN][1000 genomes]
rs2497721	0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2497722	0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2497723	0.82[ASN][1000 genomes]
rs2901044	0.80[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4144582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514325	0.81[ASN][1000 genomes]
rs56001223	0.81[ASN][1000 genomes]
rs56086836	0.81[ASN][1000 genomes]
rs56339171	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs867736	0.81[ASN][1000 genomes]
rs883511	0.81[ASN][1000 genomes]
rs883768	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9421179	0.94[JPT][hapmap]
rs986212	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116287400-116310600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:116287400-116310600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:116298000-116308800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:116298400-116310200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:116298600-116311600	Weak transcription	Gastric	stomach
6	chr10:116298800-116310400	Weak transcription	Small Intestine	intestine
7	chr10:116298800-116310600	Weak transcription	Colonic Mucosa	Colon
8	chr10:116299800-116308800	Genic enhancers	Left Ventricle	heart
9	chr10:116300600-116310600	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:116301800-116310600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:116301800-116310600	Weak transcription	Fetal Lung	lung
12	chr10:116301800-116310800	Weak transcription	HSMM	muscle
13	chr10:116304000-116310600	Weak transcription	Brain Anterior Caudate	brain
14	chr10:116304000-116310600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:116304200-116308800	Enhancers	Fetal Thymus	thymus
16	chr10:116304200-116310800	Weak transcription	Pancreas	Pancrea
17	chr10:116304400-116308800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:116304600-116308800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:116304600-116308800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:116304800-116308800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr10:116305000-116311000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:116305000-116317600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:116305200-116308800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:116305200-116308800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:116305200-116310600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:116305200-116310600	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:116305200-116310800	Weak transcription	Esophagus	oesophagus
28	chr10:116305200-116310800	Weak transcription	Lung	lung
29	chr10:116305200-116316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:116305200-116318200	Weak transcription	Fetal Intestine Large	intestine
31	chr10:116306400-116308800	Enhancers	Primary T cells from cord blood	blood
32	chr10:116306400-116310400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:116307000-116308800	Enhancers	Duodenum Mucosa	Duodenum
34	chr10:116307000-116309000	Enhancers	Fetal Heart	heart
35	chr10:116307200-116310400	Weak transcription	Adipose Nuclei	Adipose
36	chr10:116307400-116310800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:116307600-116308800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr10:116307600-116310200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:116307600-116310400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:116307600-116310600	Weak transcription	HSMMtube	muscle
41	chr10:116307600-116313400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:116307600-116316000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:116307800-116308800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:116307800-116310600	Weak transcription	Brain Substantia Nigra	brain
45	chr10:116307800-116310600	Weak transcription	HUVEC	blood vessel
46	chr10:116307800-116310800	Weak transcription	Right Ventricle	heart
47	chr10:116307800-116317600	Weak transcription	Fetal Intestine Small	intestine
48	chr10:116308000-116310600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:116308000-116310600	Weak transcription	Right Atrium	heart
50	chr10:116308200-116308800	Enhancers	Liver	Liver

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