Variant report

Variant	rs11197397
Chromosome Location	chr10:117426313-117426314
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117330704..117334059-chr10:117422669..117426384,3	MCF-7	breast:
2	chr10:117425119..117426720-chr10:117838303..117840421,2	MCF-7	breast:
3	chr10:117191105..117195463-chr10:117420913..117426714,6	MCF-7	breast:
4	chr10:117421992..117426974-chr10:117467118..117472405,7	MCF-7	breast:
5	chr10:117421922..117426738-chr10:118029983..118035874,10	MCF-7	breast:
6	chr10:117424165..117428344-chr10:117465614..117471494,6	MCF-7	breast:
7	chr10:117421405..117427759-chr10:118027934..118034540,13	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11197376	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197385	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197398	0.81[EUR][1000 genomes]
rs12219110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219313	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12220978	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12766032	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12766984	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12777776	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12784215	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532725	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2532726	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2532733	0.81[EUR][1000 genomes]
rs2901057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35198933	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117425800-117427200	Strong transcription	HSMM	muscle
2	chr10:117425800-117427800	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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