Variant report
| Variant | rs2532725 |
|---|---|
| Chromosome Location | chr10:117432639-117432640 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10509993 | 0.81[JPT][hapmap] |
| rs10510010 | 0.90[JPT][hapmap] |
| rs11197361 | 0.87[TSI][hapmap] |
| rs11197397 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs11197423 | 0.91[JPT][hapmap] |
| rs11197439 | 0.84[JPT][hapmap] |
| rs11593878 | 0.87[JPT][hapmap] |
| rs11595244 | 0.81[JPT][hapmap] |
| rs11595630 | 0.81[JPT][hapmap] |
| rs12219110 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs12766032 | 0.87[TSI][hapmap] |
| rs12769284 | 0.81[JPT][hapmap] |
| rs12772971 | 0.81[JPT][hapmap] |
| rs12774040 | 0.90[JPT][hapmap] |
| rs12781613 | 0.81[JPT][hapmap] |
| rs12784624 | 0.81[JPT][hapmap] |
| rs1414632 | 0.88[JPT][hapmap] |
| rs17093513 | 0.83[JPT][hapmap] |
| rs17724010 | 0.81[JPT][hapmap];0.80[TSI][hapmap] |
| rs17724028 | 0.81[JPT][hapmap] |
| rs17802247 | 0.81[JPT][hapmap] |
| rs17803175 | 0.81[JPT][hapmap] |
| rs17803797 | 0.81[JPT][hapmap] |
| rs1953601 | 0.81[JPT][hapmap] |
| rs2184706 | 0.81[JPT][hapmap] |
| rs2255909 | 0.83[JPT][hapmap];1.00[LWK][hapmap] |
| rs2532726 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs2804144 | 0.87[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap] |
| rs2804153 | 1.00[LWK][hapmap] |
| rs2901057 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35198933 | 0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4364974 | 0.81[JPT][hapmap] |
| rs4582885 | 0.81[JPT][hapmap] |
| rs7100684 | 0.81[JPT][hapmap] |
| rs988011 | 1.00[LWK][hapmap] |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2532725 | RAB7A | trans | cerebellum | SCAN |
| rs2532725 | HABP2 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117427200-117433200 | Weak transcription | HSMM | muscle |
| 2 | chr10:117428400-117433600 | Weak transcription | Muscle Satellite Cultured Cells | -- |
