Variant report

Variant	rs17093513
Chromosome Location	chr10:117484461-117484462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10787603	0.83[JPT][hapmap]
rs10885800	0.92[JPT][hapmap];1.00[MKK][hapmap]
rs10885816	0.83[JPT][hapmap]
rs11197423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197439	0.84[JPT][hapmap]
rs11593928	0.83[JPT][hapmap]
rs12258630	0.81[JPT][hapmap]
rs12413701	0.80[JPT][hapmap]
rs17093509	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2255909	1.00[ASW][hapmap];0.90[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420115	0.83[JPT][hapmap]
rs2420121	0.81[JPT][hapmap]
rs2420122	0.92[JPT][hapmap]
rs2420125	0.83[JPT][hapmap]
rs2532725	0.83[JPT][hapmap]
rs2804144	1.00[ASW][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];0.84[ASN][1000 genomes]
rs2804148	0.84[CEU][hapmap]
rs2804153	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2804155	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2804158	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2907551	0.83[JPT][hapmap]
rs2907552	0.83[JPT][hapmap]
rs2907554	0.83[JPT][hapmap]
rs2907556	0.83[JPT][hapmap]
rs2907559	0.83[JPT][hapmap]
rs2907578	0.83[JPT][hapmap]
rs2907580	0.83[JPT][hapmap]
rs2907582	0.83[JPT][hapmap]
rs2960664	0.83[JPT][hapmap]
rs2960665	0.83[JPT][hapmap]
rs2960676	0.83[JPT][hapmap]
rs2960678	0.83[JPT][hapmap]
rs2960680	0.83[JPT][hapmap]
rs2960729	0.83[JPT][hapmap]
rs4447088	0.83[JPT][hapmap]
rs4491139	0.87[EUR][1000 genomes]
rs6585366	0.83[JPT][hapmap]
rs758579	0.83[JPT][hapmap]
rs875377	0.83[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17093513	HABP2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117471000-117490600	Weak transcription	Aorta	Aorta
2	chr10:117480600-117485200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:117484400-117485400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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