Variant report

Variant	rs875377
Chromosome Location	chr10:117598833-117598834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10787603	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs10787607	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap]
rs10885800	0.82[CEU][hapmap];0.92[JPT][hapmap]
rs10885811	1.00[JPT][hapmap]
rs10885812	0.82[CEU][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap]
rs10885816	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885821	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap]
rs11197423	0.82[JPT][hapmap]
rs11197430	0.82[CEU][hapmap]
rs11197439	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11197460	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs11197464	0.81[CEU][hapmap];0.84[JPT][hapmap]
rs11593928	0.86[CEU][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs12258630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12411613	0.84[CEU][hapmap]
rs12413701	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1552066	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs17093513	0.83[JPT][hapmap]
rs2255909	0.83[JPT][hapmap]
rs2420115	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2420121	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2420122	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2420125	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs2420126	1.00[CEU][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap]
rs2907531	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs2907551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2907552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2907554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs2907555	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2907556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2907559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs2907567	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap]
rs2907572	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap]
rs2907573	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap]
rs2907578	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs2907580	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2907582	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2907585	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs2927373	0.85[JPT][hapmap]
rs2960660	0.95[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.97[TSI][hapmap]
rs2960661	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap]
rs2960662	0.91[CEU][hapmap];0.84[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.97[TSI][hapmap]
rs2960664	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2960665	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2960676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2960678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2960679	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs2960680	0.86[CEU][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs2960729	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4430419	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap]
rs4447088	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs6585366	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs723471	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs725556	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap]
rs758579	0.86[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs875377	TFF2	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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