Variant report

Variant	rs2960661
Chromosome Location	chr10:117575603-117575604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225614836..225617618-chr10:117574733..117576784,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143815	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10787598	0.81[CEU][hapmap]
rs10787603	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10885800	0.86[CEU][hapmap]
rs10885811	0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs10885812	0.86[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10885816	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885818	0.93[EUR][1000 genomes]
rs11197430	0.86[CEU][hapmap]
rs11197453	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197460	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11197464	0.82[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs11593928	0.90[CEU][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12258630	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs12411613	0.81[CEU][hapmap]
rs12413701	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs2420115	0.95[CEU][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2420121	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420122	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420125	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2420126	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2907531	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2907551	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2907552	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2907553	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907554	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907555	1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907556	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907558	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907559	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907561	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907566	0.86[EUR][1000 genomes]
rs2907569	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907570	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907576	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907577	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907578	1.00[CEU][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907580	0.91[CEU][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2907582	0.91[CEU][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2907584	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2907585	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2927373	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2960660	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2960662	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960664	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2960665	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2960666	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2960668	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960670	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960671	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960672	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960675	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960676	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2960678	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2960679	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2960680	0.90[CEU][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs2960681	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2960687	0.82[EUR][1000 genomes]
rs2960729	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4447088	0.90[CEU][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6585366	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7088912	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs723471	1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs725556	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7478359	0.81[EUR][1000 genomes]
rs758579	0.90[CEU][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs875377	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117561800-117577000	Weak transcription	HSMM	muscle
2	chr10:117574200-117577200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:117574400-117577000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:117574800-117577000	Weak transcription	Liver	Liver
5	chr10:117575000-117576200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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