Variant report

Variant	rs2927373
Chromosome Location	chr10:117633986-117633987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10787603	0.85[JPT][hapmap]
rs10787607	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10885800	0.85[JPT][hapmap]
rs10885811	0.82[JPT][hapmap]
rs10885812	0.92[JPT][hapmap]
rs10885816	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10885821	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10885822	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11197460	0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs11197462	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593928	0.85[JPT][hapmap]
rs12256848	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12258630	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs12413701	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1552066	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2420115	0.85[JPT][hapmap]
rs2420121	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2420122	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2420125	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2420126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2901062	0.88[YRI][hapmap]
rs2907531	0.86[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2907551	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2907552	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2907554	0.85[JPT][hapmap]
rs2907555	0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907556	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2907559	0.85[JPT][hapmap]
rs2907561	0.82[ASN][1000 genomes]
rs2907567	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2907572	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2907573	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2907575	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2907578	0.85[JPT][hapmap]
rs2907580	0.85[JPT][hapmap]
rs2907582	0.85[JPT][hapmap]
rs2907585	0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2960659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960660	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2960661	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2960662	0.85[JPT][hapmap]
rs2960664	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2960665	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2960666	0.81[ASN][1000 genomes]
rs2960671	0.82[ASN][1000 genomes]
rs2960672	0.82[ASN][1000 genomes]
rs2960676	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2960678	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2960679	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2960680	0.85[JPT][hapmap]
rs2960729	0.85[JPT][hapmap]
rs4430419	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs4447088	0.85[JPT][hapmap]
rs6585366	0.85[JPT][hapmap]
rs723471	0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs725556	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs756497	0.88[YRI][hapmap]
rs758579	0.85[JPT][hapmap]
rs875377	0.85[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117633200-117636400	Weak transcription	Fetal Stomach	stomach
2	chr10:117633600-117634000	ZNF genes & repeats	Aorta	Aorta
3	chr10:117633600-117634600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:117633800-117634200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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