Variant report

Variant	rs1552066
Chromosome Location	chr10:117635141-117635142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10787603	0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs10787607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885800	0.84[JPT][hapmap]
rs10885811	0.90[JPT][hapmap]
rs10885812	0.84[JPT][hapmap]
rs10885816	0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs10885821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885822	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11197439	0.86[JPT][hapmap]
rs11197453	0.80[ASN][1000 genomes]
rs11197460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11197462	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197464	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11593928	0.92[JPT][hapmap]
rs12256848	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12258630	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs12413701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2420115	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2420121	0.93[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2420122	0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2420125	0.92[JPT][hapmap]
rs2420126	0.86[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2907531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2907551	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2907552	0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs2907553	0.82[ASN][1000 genomes]
rs2907554	0.92[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907555	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2907556	0.93[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907558	0.82[ASN][1000 genomes]
rs2907559	0.92[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2907569	0.81[ASN][1000 genomes]
rs2907570	0.80[ASN][1000 genomes]
rs2907572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2907573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2907575	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2907578	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs2907580	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2907582	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2907585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2927373	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2960659	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2960660	0.84[JPT][hapmap]
rs2960664	0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2960665	0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2960668	0.82[ASN][1000 genomes]
rs2960670	0.82[ASN][1000 genomes]
rs2960675	0.82[ASN][1000 genomes]
rs2960676	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2960678	0.93[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2960679	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2960680	0.92[JPT][hapmap]
rs2960729	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs4430419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4447088	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs60780561	0.89[AFR][1000 genomes]
rs6585366	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs723471	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs725556	0.84[JPT][hapmap]
rs758579	0.92[JPT][hapmap]
rs875377	0.92[CHB][hapmap];0.92[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117633200-117636400	Weak transcription	Fetal Stomach	stomach
2	chr10:117634000-117657800	Weak transcription	Aorta	Aorta
3	chr10:117634400-117636000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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