Variant report

Variant	rs10885811
Chromosome Location	chr10:117534146-117534147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10787598	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10787603	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10787607	0.90[JPT][hapmap]
rs10885798	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885800	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885802	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885809	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885812	0.95[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885816	0.81[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885821	0.90[JPT][hapmap]
rs11197430	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11197439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197453	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197460	0.81[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs11197464	0.81[JPT][hapmap]
rs11593928	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11595693	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12258630	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12267719	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12360291	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12411613	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12413701	0.88[JPT][hapmap];0.85[AMR][1000 genomes]
rs1552066	0.90[JPT][hapmap]
rs17093558	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2420115	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2420121	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420122	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420125	1.00[JPT][hapmap]
rs2420126	0.82[JPT][hapmap]
rs2907531	0.90[JPT][hapmap]
rs2907551	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2907552	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2907553	0.85[ASN][1000 genomes]
rs2907554	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2907555	0.90[JPT][hapmap]
rs2907556	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2907558	0.85[ASN][1000 genomes]
rs2907559	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2907567	0.90[JPT][hapmap]
rs2907569	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907570	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907572	0.90[JPT][hapmap]
rs2907573	0.90[JPT][hapmap]
rs2907576	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2907577	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2907578	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2907580	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2907582	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2907584	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2907585	0.90[JPT][hapmap]
rs2927373	0.82[JPT][hapmap]
rs2960660	0.81[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs2960661	0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs2960662	0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs2960664	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2960665	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2960666	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2960668	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960670	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960671	0.81[EUR][1000 genomes]
rs2960672	0.81[EUR][1000 genomes]
rs2960675	0.85[ASN][1000 genomes]
rs2960676	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2960678	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2960679	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs2960680	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960681	0.89[EUR][1000 genomes]
rs2960687	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2960729	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4430419	0.90[JPT][hapmap]
rs4447088	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6585366	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7088912	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs723471	0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs725556	0.90[JPT][hapmap]
rs72826872	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7478359	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs758579	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs875377	1.00[JPT][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117531000-117534400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:117531200-117534400	Enhancers	NHDF-Ad	bronchial
3	chr10:117531200-117534600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:117531200-117534600	Enhancers	HSMM	muscle
5	chr10:117531200-117534800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:117532800-117534400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:117532800-117534400	Enhancers	NH-A	brain
8	chr10:117532800-117534400	Enhancers	Osteobl	bone
9	chr10:117532800-117534800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:117532800-117534800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:117533000-117534200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:117533400-117535000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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