Variant report

Variant	rs17093558
Chromosome Location	chr10:117523338-117523339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10787598	1.00[ASW][hapmap];0.86[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10787603	0.86[ASW][hapmap]
rs10885798	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885800	0.91[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10885802	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885809	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885811	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10885812	0.81[CEU][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs11197430	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11197439	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11595693	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12267719	0.95[EUR][1000 genomes]
rs12360291	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12411613	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2420122	0.82[CEU][hapmap]
rs2907584	0.87[EUR][1000 genomes]
rs2960662	0.85[CEU][hapmap]
rs2960681	0.84[ASN][1000 genomes]
rs2960687	0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72826872	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7478359	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117522200-117525600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:117522200-117526400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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