Variant report

Variant	rs2960687
Chromosome Location	chr10:117532672-117532673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10787598	0.82[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs10787603	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10885798	0.84[EUR][1000 genomes]
rs10885800	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs10885802	0.86[EUR][1000 genomes]
rs10885809	0.92[EUR][1000 genomes]
rs10885810	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs10885811	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10885812	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10885816	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs11197430	0.86[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs11197439	0.88[EUR][1000 genomes]
rs11197453	0.83[EUR][1000 genomes]
rs11197460	0.82[CEU][hapmap]
rs1157117	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs11593928	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11595693	0.82[EUR][1000 genomes]
rs12267719	0.84[EUR][1000 genomes]
rs12360291	0.84[EUR][1000 genomes]
rs12411613	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs17093558	0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2420115	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2420121	0.81[EUR][1000 genomes]
rs2420122	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2907569	0.82[EUR][1000 genomes]
rs2907570	0.82[EUR][1000 genomes]
rs2907576	0.82[EUR][1000 genomes]
rs2907577	0.82[EUR][1000 genomes]
rs2907578	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs2907580	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs2907582	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs2907584	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2960660	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs2960661	0.82[EUR][1000 genomes]
rs2960662	0.82[EUR][1000 genomes]
rs2960664	0.82[EUR][1000 genomes]
rs2960665	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs2960666	0.83[EUR][1000 genomes]
rs2960668	0.81[EUR][1000 genomes]
rs2960670	0.81[EUR][1000 genomes]
rs2960671	0.81[EUR][1000 genomes]
rs2960672	0.81[EUR][1000 genomes]
rs2960680	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs2960681	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960729	0.82[EUR][1000 genomes]
rs4447088	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs6585366	0.82[EUR][1000 genomes]
rs7088912	0.86[EUR][1000 genomes]
rs723471	0.83[EUR][1000 genomes]
rs72826872	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7478359	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs758579	0.91[CEU][hapmap];0.89[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117529200-117533400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:117531000-117534400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:117531200-117534400	Enhancers	NHDF-Ad	bronchial
4	chr10:117531200-117534600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:117531200-117534600	Enhancers	HSMM	muscle
6	chr10:117531200-117534800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:117531600-117533800	Enhancers	NHLF	lung
8	chr10:117531800-117532800	Weak transcription	NH-A	brain
9	chr10:117532200-117533200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:117532200-117533800	Enhancers	HSMMtube	muscle
11	chr10:117532400-117532800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:117532400-117532800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:117532400-117532800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:117532400-117532800	Enhancers	NHEK	skin
15	chr10:117532400-117532800	Flanking Active TSS	Osteobl	bone
16	chr10:117532400-117533600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:117532600-117533200	Weak transcription	Aorta	Aorta

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