Variant report

Variant	rs1157117
Chromosome Location	chr10:117532391-117532392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1007581	0.88[CEU][hapmap]
rs10490916	0.92[CEU][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10490919	0.92[CEU][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10787599	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10787601	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10787606	0.81[CEU][hapmap]
rs10885797	0.80[AMR][1000 genomes]
rs10885799	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10885801	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10885806	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885810	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885814	0.84[CEU][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11197429	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11197449	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11197452	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11197454	0.82[EUR][1000 genomes]
rs12219077	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12412579	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12414992	0.86[EUR][1000 genomes]
rs12774281	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12777802	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12778258	0.81[EUR][1000 genomes]
rs12778588	0.81[EUR][1000 genomes]
rs12784311	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs12784459	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1547948	0.92[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs2052066	0.84[CEU][hapmap]
rs2243740	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs2420109	0.84[CEU][hapmap]
rs2420110	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2420111	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2420116	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2420124	0.84[CEU][hapmap]
rs2532709	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2804160	0.84[CEU][hapmap]
rs2804161	0.80[CEU][hapmap]
rs2901062	0.84[CEU][hapmap]
rs2960687	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs2960715	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs4420180	0.84[CEU][hapmap]
rs4529823	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4531378	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4600124	0.92[CEU][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4751568	0.82[EUR][1000 genomes]
rs4751569	0.84[CEU][hapmap];0.84[MEX][hapmap]
rs4751930	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6585362	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs756497	0.84[CEU][hapmap]
rs7895176	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7915580	0.86[EUR][1000 genomes]
rs7923360	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs875376	0.84[CEU][hapmap]
rs9332403	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs961155	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs979416	0.84[CEU][hapmap];0.86[MEX][hapmap]
rs991389	0.92[CEU][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117527000-117532400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:117529200-117533400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:117531000-117534400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:117531200-117534400	Enhancers	NHDF-Ad	bronchial
5	chr10:117531200-117534600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:117531200-117534600	Enhancers	HSMM	muscle
7	chr10:117531200-117534800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:117531400-117532400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:117531400-117532400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:117531400-117532400	Enhancers	Osteobl	bone
11	chr10:117531600-117533800	Enhancers	NHLF	lung
12	chr10:117531800-117532800	Weak transcription	NH-A	brain
13	chr10:117532000-117532400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:117532000-117532600	Active TSS	Aorta	Aorta
15	chr10:117532200-117533200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:117532200-117533800	Enhancers	HSMMtube	muscle

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