Variant report

Variant	rs756497
Chromosome Location	chr10:117612248-117612249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1007581	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1017822	0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1019150	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10490916	0.85[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10490919	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs10787599	0.83[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10787601	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10787605	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10787606	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885797	0.85[JPT][hapmap]
rs10885799	0.83[CHB][hapmap]
rs10885801	0.80[JPT][hapmap]
rs10885810	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs10885814	0.92[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885817	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885823	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10885824	0.81[ASN][1000 genomes]
rs11197429	0.81[JPT][hapmap]
rs11197449	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197452	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197454	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11197455	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197463	0.88[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197464	0.88[YRI][hapmap]
rs1157117	0.84[CEU][hapmap]
rs12412579	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12414992	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12774281	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12777802	0.91[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12778258	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12778588	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12784311	0.90[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12784459	0.92[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1547948	0.85[CEU][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2052066	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2254395	0.82[ASN][1000 genomes]
rs2420110	0.81[JPT][hapmap]
rs2420111	0.81[JPT][hapmap]
rs2420116	0.92[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2420119	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2420124	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2532709	0.81[JPT][hapmap]
rs2615886	0.82[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs2615890	0.82[ASN][1000 genomes]
rs2615891	0.82[CHB][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs2901062	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927373	0.88[YRI][hapmap]
rs2960715	0.81[JPT][hapmap]
rs4307638	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4420180	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4529823	0.92[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4531378	0.92[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4600124	0.82[CHD][hapmap]
rs4751568	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4751569	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6585362	0.85[CEU][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7895176	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7915580	0.84[ASN][1000 genomes]
rs875376	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs9332403	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs961155	0.95[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs979416	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs991389	0.85[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs756497	SLC39A3	trans	cerebellum	SCAN
rs756497	DCLRE1A	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117605800-117612600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:117607600-117621400	Weak transcription	Aorta	Aorta
3	chr10:117609400-117614200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:117610400-117613800	Weak transcription	Pancreas	Pancrea
5	chr10:117612000-117613800	Enhancers	NHEK	skin
6	chr10:117612000-117614000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:117612200-117616600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:117612200-117628000	Weak transcription	Ovary	ovary

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