Variant report

Variant	rs9332403
Chromosome Location	chr10:117548490-117548491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1007581	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1017822	0.82[JPT][hapmap]
rs1019150	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10490916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490919	0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs10787599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787601	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787605	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10787606	0.83[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885797	0.93[JPT][hapmap]
rs10885799	0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs10885801	0.81[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes]
rs10885810	0.85[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10885814	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885817	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885823	0.88[JPT][hapmap]
rs11197429	0.82[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes]
rs11197449	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197452	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197454	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197455	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197463	0.87[JPT][hapmap]
rs1157117	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12219077	0.81[AMR][1000 genomes]
rs12412579	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12414992	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12774281	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12777802	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12778258	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12778588	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12784311	0.95[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12784459	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1547948	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2052066	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2243740	0.81[JPT][hapmap]
rs2420110	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2420111	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs2420116	0.93[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2420119	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420124	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2532709	0.82[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2615886	0.87[JPT][hapmap]
rs2615891	0.87[JPT][hapmap]
rs2804161	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs2901062	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2960715	0.82[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4307638	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4420180	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4529823	0.93[CEU][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4531378	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4600124	0.85[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4751568	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4751569	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6585362	1.00[CEU][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs756497	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7895176	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915580	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs875376	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs961155	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs979416	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs991389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117548000-117548600	Enhancers	Fetal Brain Female	brain
2	chr10:117548000-117549200	Enhancers	Brain Germinal Matrix	brain
3	chr10:117548200-117548600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117548200-117549400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:117548200-117549800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:117548200-117550000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:117548200-117550000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:117548400-117549200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:117548400-117549600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:117548400-117550000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:117548400-117550200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:117548400-117550200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:117548400-117550400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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