Variant report

Variant	rs10490919
Chromosome Location	chr10:117512588-117512589
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1007581	0.81[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap]
rs10490916	0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs10787599	0.87[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes]
rs10885772	0.87[JPT][hapmap]
rs10885789	0.87[JPT][hapmap]
rs10885797	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885806	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10885810	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10885814	0.89[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap]
rs10885823	0.87[JPT][hapmap]
rs11197429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197449	0.81[AMR][1000 genomes]
rs11197463	0.87[JPT][hapmap]
rs1157117	0.92[CEU][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12219077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774281	0.83[AMR][1000 genomes]
rs12777802	0.93[JPT][hapmap]
rs12784311	0.93[JPT][hapmap]
rs12784459	0.82[CHD][hapmap];0.87[JPT][hapmap]
rs1547948	0.85[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap]
rs2052066	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2243740	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2286631	0.87[JPT][hapmap]
rs2420109	0.85[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.88[LWK][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2420110	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420111	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2420116	0.94[JPT][hapmap]
rs2420124	0.83[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs2532709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2615886	0.87[JPT][hapmap]
rs2615891	0.87[JPT][hapmap]
rs2804160	0.88[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2804161	0.89[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2901062	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2960715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4420180	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4529823	0.93[JPT][hapmap]
rs4531378	0.82[CHD][hapmap];0.87[JPT][hapmap]
rs4600124	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4751569	0.83[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs4751930	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6585362	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs756497	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs7895176	0.81[AMR][1000 genomes]
rs7923360	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs875376	0.83[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs9332403	0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs961155	0.82[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap]
rs979416	0.83[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap]
rs991389	0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs992888	0.87[JPT][hapmap]

Variant related diseases (count:1)

Disease	PMID	Source
Information processing speed	21130836	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10490919	INPP5F	cis	parietal	SCAN
rs10490919	PRDX3	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117489400-117520800	Weak transcription	HSMM	muscle
2	chr10:117510800-117512600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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