Variant report

Variant	rs2286631
Chromosome Location	chr10:117486910-117486911
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10159619	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10159620	0.88[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10159623	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10430684	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10430685	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10430686	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10490919	0.87[JPT][hapmap]
rs10510011	0.88[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10736242	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10749178	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10749179	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10749180	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10787587	0.81[AMR][1000 genomes]
rs10787588	0.81[AMR][1000 genomes]
rs10787589	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10787590	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10787591	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10787592	0.88[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10787593	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10787594	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10787595	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10787596	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10787597	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10885769	0.84[CEU][hapmap];0.85[AMR][1000 genomes]
rs10885770	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs10885771	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10885772	0.88[CEU][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10885773	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10885774	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10885775	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10885776	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10885778	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10885779	0.82[EUR][1000 genomes]
rs10885780	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10885781	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10885782	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10885783	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10885784	0.81[EUR][1000 genomes]
rs10885785	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10885786	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10885787	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10885788	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10885789	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885790	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10885791	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10885792	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10885793	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10885794	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10885795	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10885797	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs10885799	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10885801	0.86[JPT][hapmap]
rs11197418	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11197419	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11197420	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11197421	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11197422	0.88[CEU][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11197429	0.87[JPT][hapmap]
rs12777802	0.86[JPT][hapmap]
rs12784311	0.86[JPT][hapmap]
rs1547948	0.80[JPT][hapmap]
rs2052067	0.88[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2243740	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2420103	0.81[AMR][1000 genomes]
rs2420104	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs2420107	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2420108	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2420109	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2420110	0.87[JPT][hapmap]
rs2420111	0.87[JPT][hapmap]
rs2420116	0.80[JPT][hapmap]
rs2532709	0.87[JPT][hapmap]
rs2804160	0.87[JPT][hapmap]
rs2804161	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2901058	0.81[AMR][1000 genomes]
rs2901059	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2960715	0.87[JPT][hapmap]
rs34597035	0.81[AMR][1000 genomes]
rs4411216	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4481944	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4600124	0.82[JPT][hapmap]
rs4751923	0.81[GIH][hapmap]
rs4751925	0.81[AMR][1000 genomes]
rs4751926	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4751927	0.88[CEU][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs4751928	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4751929	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6585351	0.80[AMR][1000 genomes]
rs6585362	0.80[JPT][hapmap]
rs7067647	0.88[CEU][hapmap];0.91[GIH][hapmap];0.85[LWK][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7069993	0.88[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7076841	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7076927	0.88[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7077305	0.87[CEU][hapmap];0.85[AMR][1000 genomes]
rs7077515	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7086114	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7086132	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7093582	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs7095116	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7894330	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7894804	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7896291	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7897855	0.82[EUR][1000 genomes]
rs7900516	0.84[CEU][hapmap]
rs7900551	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7902827	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7904246	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7904383	0.88[CEU][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7904786	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7908611	0.84[CEU][hapmap]
rs7908993	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7909272	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7913341	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7914798	0.88[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7915109	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7917642	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8181366	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8181393	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs961155	0.80[JPT][hapmap]
rs992888	0.88[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2286631	SNX21	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117471000-117490600	Weak transcription	Aorta	Aorta
2	chr10:117486800-117487200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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