Variant report

Variant	rs992888
Chromosome Location	chr10:117470385-117470386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:117424165..117428344-chr10:117465614..117471494,6	MCF-7	breast:
2	chr10:117470176..117472833-chr10:118030430..118034037,4	MCF-7	breast:
3	chr10:117468027..117471001-chr10:117471379..117473007,2	MCF-7	breast:
4	chr10:117421992..117426974-chr10:117467118..117472405,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10159619	0.86[EUR][1000 genomes]
rs10159620	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10159623	0.86[EUR][1000 genomes]
rs10430684	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10430685	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10430686	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10490919	0.87[JPT][hapmap]
rs10510011	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10736242	0.91[EUR][1000 genomes]
rs10749178	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10749179	0.91[EUR][1000 genomes]
rs10749180	0.86[EUR][1000 genomes]
rs10787586	0.83[CEU][hapmap]
rs10787587	0.88[EUR][1000 genomes]
rs10787588	0.88[EUR][1000 genomes]
rs10787589	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10787590	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10787591	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10787592	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10787593	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10787594	0.86[EUR][1000 genomes]
rs10787595	0.86[EUR][1000 genomes]
rs10787596	0.85[EUR][1000 genomes]
rs10787597	0.86[EUR][1000 genomes]
rs10885767	0.82[CEU][hapmap]
rs10885768	0.80[CEU][hapmap]
rs10885769	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10885770	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10885771	0.91[EUR][1000 genomes]
rs10885772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10885773	0.91[EUR][1000 genomes]
rs10885774	0.92[EUR][1000 genomes]
rs10885775	0.92[EUR][1000 genomes]
rs10885776	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10885778	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885779	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10885780	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885781	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885782	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10885783	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10885784	0.89[EUR][1000 genomes]
rs10885785	0.89[EUR][1000 genomes]
rs10885786	0.91[EUR][1000 genomes]
rs10885787	0.91[EUR][1000 genomes]
rs10885788	0.91[EUR][1000 genomes]
rs10885789	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10885790	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10885791	0.85[EUR][1000 genomes]
rs10885792	0.84[EUR][1000 genomes]
rs10885793	0.86[EUR][1000 genomes]
rs10885794	0.86[EUR][1000 genomes]
rs10885795	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10885797	0.93[JPT][hapmap]
rs10885799	0.87[JPT][hapmap]
rs10885801	0.87[JPT][hapmap]
rs11197410	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197418	0.91[EUR][1000 genomes]
rs11197419	0.91[EUR][1000 genomes]
rs11197420	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11197421	0.86[EUR][1000 genomes]
rs11197422	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11197429	0.88[JPT][hapmap]
rs12777802	0.86[JPT][hapmap]
rs12784311	0.86[JPT][hapmap]
rs1547948	0.80[JPT][hapmap]
rs2052067	0.92[CEU][hapmap]
rs2243740	0.93[JPT][hapmap]
rs2286631	0.88[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420102	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2420103	0.88[EUR][1000 genomes]
rs2420104	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2420107	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2420108	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2420109	1.00[JPT][hapmap]
rs2420110	0.88[JPT][hapmap]
rs2420111	0.88[JPT][hapmap]
rs2420116	0.81[JPT][hapmap]
rs2532709	0.88[JPT][hapmap]
rs2532721	0.91[AFR][1000 genomes]
rs2804157	0.91[AFR][1000 genomes]
rs2804159	0.91[AFR][1000 genomes]
rs2804160	0.88[JPT][hapmap]
rs2804161	0.93[JPT][hapmap]
rs2901058	0.87[EUR][1000 genomes]
rs2901059	0.92[EUR][1000 genomes]
rs2960715	0.88[JPT][hapmap]
rs34597035	0.87[EUR][1000 genomes]
rs4411216	0.86[EUR][1000 genomes]
rs4481944	0.91[EUR][1000 genomes]
rs4529823	0.80[JPT][hapmap]
rs4600124	0.82[JPT][hapmap]
rs4751924	0.89[CEU][hapmap]
rs4751925	0.90[EUR][1000 genomes]
rs4751926	0.86[EUR][1000 genomes]
rs4751927	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4751928	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4751929	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6585351	0.90[EUR][1000 genomes]
rs6585362	0.81[JPT][hapmap]
rs7067647	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7069993	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7076841	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7076927	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7077305	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7077515	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7086114	0.92[EUR][1000 genomes]
rs7086132	0.92[EUR][1000 genomes]
rs7093582	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7095116	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7894330	0.86[EUR][1000 genomes]
rs7894804	0.86[EUR][1000 genomes]
rs7896291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7897855	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7900426	0.90[EUR][1000 genomes]
rs7900516	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs7900551	0.92[EUR][1000 genomes]
rs7902827	0.93[EUR][1000 genomes]
rs7904246	0.91[EUR][1000 genomes]
rs7904383	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7904786	0.91[EUR][1000 genomes]
rs7908611	0.96[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7908993	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7909272	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7913341	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7914798	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7915109	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7917642	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8181366	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs8181393	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs961155	0.80[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117470000-117470800	Enhancers	HSMMtube	muscle

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