Variant report

Variant	rs2420116
Chromosome Location	chr10:117551276-117551277
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1007581	0.96[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1019150	0.88[EUR][1000 genomes]
rs10490916	0.92[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10490919	0.94[JPT][hapmap]
rs10787599	0.92[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10787601	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10787605	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10787606	0.91[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10885772	0.80[JPT][hapmap]
rs10885789	0.81[JPT][hapmap]
rs10885797	0.93[JPT][hapmap]
rs10885799	0.93[JPT][hapmap]
rs10885801	0.93[JPT][hapmap]
rs10885810	0.82[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs10885814	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10885817	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10885823	0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11197429	0.94[JPT][hapmap]
rs11197449	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197452	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197454	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197455	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11197463	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1157117	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs12412579	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12414992	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12774281	0.97[EUR][1000 genomes]
rs12777802	1.00[CEU][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12778258	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12778588	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12784311	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12784459	1.00[CEU][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1547948	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052066	0.93[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2243740	0.87[JPT][hapmap]
rs2286631	0.80[JPT][hapmap]
rs2420109	0.80[JPT][hapmap]
rs2420110	0.94[JPT][hapmap]
rs2420111	0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2420119	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420124	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2532709	0.94[JPT][hapmap]
rs2615886	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2615891	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2804160	0.82[JPT][hapmap]
rs2804161	0.87[JPT][hapmap]
rs2901062	0.92[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2960715	0.94[JPT][hapmap]
rs4307638	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4420180	0.93[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4529823	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4531378	1.00[CEU][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4600124	0.88[JPT][hapmap]
rs4751568	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4751569	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6585362	0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088770	0.82[ASN][1000 genomes]
rs756497	0.92[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7895176	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7915580	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs875376	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs9332403	0.93[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs961155	0.95[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979416	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs991389	0.92[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs992888	0.81[JPT][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117550800-117551800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:117551200-117552000	Enhancers	Muscle Satellite Cultured Cells	--

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