Variant report

Variant	rs11197463
Chromosome Location	chr10:117627008-117627009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1007581	0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1017822	0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs1019150	0.81[EUR][1000 genomes]
rs10490916	0.89[CHD][hapmap];0.87[JPT][hapmap]
rs10490919	0.87[JPT][hapmap]
rs10787599	0.87[JPT][hapmap]
rs10787601	0.80[ASN][1000 genomes]
rs10787605	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10787606	0.86[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10885797	0.85[JPT][hapmap]
rs10885799	0.86[JPT][hapmap]
rs10885801	0.86[JPT][hapmap]
rs10885814	0.89[CHD][hapmap];0.87[JPT][hapmap]
rs10885817	0.82[ASN][1000 genomes]
rs10885823	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885824	0.87[ASN][1000 genomes]
rs11197429	0.87[JPT][hapmap]
rs11197449	0.80[ASN][1000 genomes]
rs11197452	0.80[ASN][1000 genomes]
rs12412579	0.81[ASN][1000 genomes]
rs12414992	0.84[ASN][1000 genomes]
rs12777802	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12778258	0.85[ASN][1000 genomes]
rs12778588	0.85[ASN][1000 genomes]
rs12784459	0.85[CHD][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap]
rs1547948	0.87[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2052066	0.81[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2243740	0.81[JPT][hapmap]
rs2254395	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420110	0.87[JPT][hapmap]
rs2420111	0.87[JPT][hapmap]
rs2420116	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2420119	0.80[ASN][1000 genomes]
rs2420124	0.81[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2532709	0.87[JPT][hapmap]
rs2615886	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2615890	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2615891	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2804161	0.81[JPT][hapmap]
rs2901062	0.88[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2907575	0.84[AFR][1000 genomes]
rs2907585	0.84[YRI][hapmap]
rs2960715	0.87[JPT][hapmap]
rs4307638	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4420180	0.81[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4529823	0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs4531378	0.86[CHD][hapmap];0.87[JPT][hapmap];0.80[TSI][hapmap]
rs4600124	0.81[JPT][hapmap]
rs4751568	0.85[ASN][1000 genomes]
rs4751569	0.81[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6585362	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs756497	0.88[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7895176	0.80[ASN][1000 genomes]
rs875376	0.81[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.87[TSI][hapmap]
rs9332403	0.87[JPT][hapmap]
rs961155	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs979416	0.81[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs991389	0.89[CHD][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197463	SLC39A3	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117612200-117628000	Weak transcription	Ovary	ovary
2	chr10:117625200-117627200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:117626400-117627200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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