Variant report

Variant	rs10885823
Chromosome Location	chr10:117635454-117635455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1007581	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs1017822	0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10490916	0.87[JPT][hapmap]
rs10490919	0.87[JPT][hapmap]
rs10787599	0.88[JPT][hapmap]
rs10787606	0.83[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10885797	0.86[JPT][hapmap]
rs10885799	0.86[JPT][hapmap]
rs10885801	0.87[JPT][hapmap]
rs10885814	0.87[JPT][hapmap]
rs10885824	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197429	0.88[JPT][hapmap]
rs11197463	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12777802	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12778258	0.81[ASN][1000 genomes]
rs12778588	0.81[ASN][1000 genomes]
rs12784459	0.87[JPT][hapmap]
rs1547948	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2052066	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs2243740	0.81[JPT][hapmap]
rs2254395	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2420110	0.88[JPT][hapmap]
rs2420111	0.88[JPT][hapmap]
rs2420116	0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2420124	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2532709	0.88[JPT][hapmap]
rs2615886	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2615890	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2615891	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2804161	0.81[JPT][hapmap]
rs2901062	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2907585	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs2960715	0.88[JPT][hapmap]
rs4420180	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs4529823	0.87[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4531378	0.87[JPT][hapmap]
rs4600124	0.81[JPT][hapmap]
rs4751568	0.81[ASN][1000 genomes]
rs4751569	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs6585362	0.94[JPT][hapmap]
rs756497	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs875376	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9332403	0.88[JPT][hapmap]
rs961155	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs979416	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs991389	0.88[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117633200-117636400	Weak transcription	Fetal Stomach	stomach
2	chr10:117634000-117657800	Weak transcription	Aorta	Aorta
3	chr10:117634400-117636000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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