Variant report

Variant	rs2615891
Chromosome Location	chr10:117640316-117640317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117640064..117642059-chr10:117645895..117648806,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1007581	0.87[JPT][hapmap]
rs1017822	0.83[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10490916	0.82[CHD][hapmap];0.87[JPT][hapmap]
rs10490919	0.87[JPT][hapmap]
rs10787599	0.87[JPT][hapmap]
rs10787606	0.82[CEU][hapmap]
rs10885797	0.85[JPT][hapmap]
rs10885799	0.86[JPT][hapmap]
rs10885801	0.86[JPT][hapmap]
rs10885814	0.82[CHD][hapmap];0.87[JPT][hapmap]
rs10885823	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10885824	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197429	0.87[JPT][hapmap]
rs11197463	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12777802	0.86[JPT][hapmap]
rs12784459	0.85[CHD][hapmap];0.87[JPT][hapmap];0.81[TSI][hapmap]
rs1547948	0.81[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs2052066	0.87[JPT][hapmap]
rs2243740	0.81[JPT][hapmap]
rs2254395	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420110	0.87[JPT][hapmap]
rs2420111	0.87[JPT][hapmap]
rs2420116	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2420124	0.82[CHD][hapmap];0.87[JPT][hapmap];0.81[TSI][hapmap]
rs2532709	0.87[JPT][hapmap]
rs2615886	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615890	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804161	0.81[JPT][hapmap]
rs2901062	0.82[CHB][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs2960715	0.87[JPT][hapmap]
rs4420180	0.87[JPT][hapmap]
rs4529823	0.93[JPT][hapmap]
rs4531378	0.86[CHD][hapmap];0.87[JPT][hapmap]
rs4600124	0.81[JPT][hapmap]
rs4751569	0.82[CHD][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap]
rs6585362	0.94[JPT][hapmap]
rs756497	0.82[CHB][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs875376	0.82[CHD][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap]
rs9332403	0.87[JPT][hapmap]
rs961155	0.86[JPT][hapmap]
rs979416	0.82[CHD][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];0.81[TSI][hapmap]
rs991389	0.82[CHD][hapmap];0.87[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117634000-117657800	Weak transcription	Aorta	Aorta
2	chr10:117636800-117644000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:117639800-117642600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links