Variant report

Variant	rs2907585
Chromosome Location	chr10:117614128-117614129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10787603	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10787607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885800	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs10885811	0.90[JPT][hapmap]
rs10885812	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs10885816	0.95[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885818	0.83[EUR][1000 genomes]
rs10885821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885822	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885823	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs11197430	0.82[CEU][hapmap]
rs11197439	0.86[JPT][hapmap]
rs11197453	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197462	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197463	0.84[YRI][hapmap]
rs11197464	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs11593928	0.86[CEU][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12256848	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12258630	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs12411613	0.81[CEU][hapmap]
rs12413701	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2420115	0.91[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2420121	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420122	0.96[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420125	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs2420126	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2615886	0.84[YRI][hapmap]
rs2907531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2907551	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2907552	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2907553	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2907554	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2907555	1.00[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2907556	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2907558	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2907559	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2907561	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2907566	0.83[EUR][1000 genomes]
rs2907567	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2907569	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2907570	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2907573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2907575	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2907576	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907577	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907578	0.95[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907580	0.87[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2907582	0.87[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2927373	0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2960659	0.82[ASN][1000 genomes]
rs2960660	0.95[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs2960661	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2960662	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2960664	0.96[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2960665	0.95[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2960666	0.85[EUR][1000 genomes]
rs2960668	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2960670	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2960671	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2960672	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2960675	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2960676	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2960678	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2960679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2960680	0.86[CEU][hapmap];0.92[JPT][hapmap]
rs2960729	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4430419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4447088	0.86[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6585366	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7088912	0.82[EUR][1000 genomes]
rs723471	0.96[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs725556	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs758579	0.86[CEU][hapmap];0.92[JPT][hapmap]
rs875377	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117607600-117621400	Weak transcription	Aorta	Aorta
2	chr10:117609400-117614200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:117612200-117616600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:117612200-117628000	Weak transcription	Ovary	ovary
5	chr10:117613800-117614200	Enhancers	Pancreas	Pancrea
6	chr10:117613800-117614600	Enhancers	Esophagus	oesophagus
7	chr10:117613800-117614800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr10:117613800-117615000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:117613800-117615000	Flanking Active TSS	NHEK	skin
10	chr10:117614000-117614200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr10:117614000-117614200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:117614000-117614600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:117614000-117614600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:117614000-117614800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:117614000-117615000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:117614000-117615200	Enhancers	HMEC	breast

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