Variant report

Variant	rs2420115
Chromosome Location	chr10:117549262-117549263
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10787603	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10787607	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs10885800	0.82[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs10885809	0.83[ASN][1000 genomes]
rs10885811	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10885812	0.91[CEU][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10885816	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885818	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10885821	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs10885822	0.82[ASN][1000 genomes]
rs11197423	0.83[JPT][hapmap]
rs11197430	0.82[CEU][hapmap]
rs11197439	0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11197453	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197460	0.91[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197462	0.82[ASN][1000 genomes]
rs11197464	0.84[JPT][hapmap]
rs11593928	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12256848	0.82[ASN][1000 genomes]
rs12258630	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12411613	0.85[CEU][hapmap];0.83[ASN][1000 genomes]
rs12413701	0.83[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1552066	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs17093513	0.83[JPT][hapmap]
rs2255909	0.83[JPT][hapmap]
rs2420121	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2420122	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2420125	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs2420126	0.91[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs2907531	0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907551	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2907552	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2907553	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907554	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907555	0.91[CEU][hapmap];0.80[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2907556	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907558	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907559	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907561	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2907566	0.86[EUR][1000 genomes]
rs2907567	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907569	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2907570	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2907572	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907573	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907576	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2907577	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2907578	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2907580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907582	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907584	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2907585	0.91[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2927373	0.85[JPT][hapmap]
rs2960660	0.95[CEU][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2960661	0.95[CEU][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2960662	0.90[CEU][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2960664	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2960665	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2960666	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2960668	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960670	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960671	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2960672	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2960675	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960676	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2960678	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2960679	0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2960680	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2960681	0.93[EUR][1000 genomes]
rs2960687	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2960729	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4430419	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs4447088	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6585366	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088912	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs723471	0.95[CEU][hapmap];0.80[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs725556	0.91[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7478359	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs758579	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs875377	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117548200-117549400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:117548200-117549800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:117548200-117550000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:117548200-117550000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:117548400-117549600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:117548400-117550000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:117548400-117550200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:117548400-117550200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:117548400-117550400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:117548600-117549600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:117548600-117550200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:117548600-117550400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:117548800-117549800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:117549000-117550800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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