Variant report

Variant	rs11197430
Chromosome Location	chr10:117505905-117505906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117505649..117508241-chr10:117509023..117511688,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10787598	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10787603	0.86[ASW][hapmap];0.86[CEU][hapmap]
rs10885798	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10885800	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10885802	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10885809	0.87[EUR][1000 genomes]
rs10885811	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10885812	0.91[CEU][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs10885816	0.90[CEU][hapmap]
rs11197439	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11197460	0.86[CEU][hapmap]
rs11593928	0.86[CEU][hapmap];0.83[GIH][hapmap]
rs11595693	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12258630	0.81[CEU][hapmap]
rs12267719	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12360291	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12411613	0.95[CEU][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17093558	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2420115	0.82[CEU][hapmap]
rs2420121	0.86[CEU][hapmap]
rs2420122	0.91[CEU][hapmap]
rs2420125	0.82[CEU][hapmap]
rs2420126	0.82[CEU][hapmap]
rs2907531	0.82[CEU][hapmap]
rs2907551	0.82[CEU][hapmap]
rs2907552	0.82[CEU][hapmap]
rs2907554	0.82[CEU][hapmap]
rs2907555	0.82[CEU][hapmap]
rs2907556	0.82[CEU][hapmap]
rs2907559	0.82[CEU][hapmap]
rs2907578	0.86[CEU][hapmap]
rs2907582	0.86[CEU][hapmap]
rs2907584	0.83[EUR][1000 genomes]
rs2907585	0.82[CEU][hapmap]
rs2960660	0.86[CEU][hapmap]
rs2960661	0.86[CEU][hapmap]
rs2960662	0.81[CEU][hapmap]
rs2960664	0.86[CEU][hapmap]
rs2960665	0.89[CEU][hapmap]
rs2960676	0.82[CEU][hapmap]
rs2960678	0.82[CEU][hapmap]
rs2960679	0.82[CEU][hapmap]
rs2960680	0.86[CEU][hapmap];0.83[GIH][hapmap]
rs2960687	0.86[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2960729	0.86[CEU][hapmap]
rs4447088	0.86[CEU][hapmap];0.83[GIH][hapmap]
rs6585366	0.86[CEU][hapmap]
rs723471	0.86[CEU][hapmap]
rs725556	0.82[CEU][hapmap]
rs72826872	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7478359	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs758579	0.86[CEU][hapmap];0.83[GIH][hapmap]
rs875377	0.82[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197430	HABP2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117489400-117520800	Weak transcription	HSMM	muscle
2	chr10:117490800-117509600	Weak transcription	Aorta	Aorta

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