Variant report

Variant	rs2907572
Chromosome Location	chr10:117617518-117617519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10787603	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.84[ASN][1000 genomes]
rs10787607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885800	0.84[JPT][hapmap]
rs10885811	0.90[JPT][hapmap]
rs10885812	0.84[JPT][hapmap]
rs10885816	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs10885821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885822	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197439	0.86[JPT][hapmap]
rs11197453	0.84[ASN][1000 genomes]
rs11197460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197462	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197464	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593928	0.86[CHD][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap]
rs12256848	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258630	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs12411613	0.84[CEU][hapmap]
rs12413701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1552066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420115	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2420121	0.92[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2420122	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2420125	0.87[CHD][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap]
rs2420126	0.86[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.93[ASN][1000 genomes]
rs2907531	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2907551	0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap]
rs2907552	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs2907553	0.86[ASN][1000 genomes]
rs2907554	0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.86[ASN][1000 genomes]
rs2907555	0.84[JPT][hapmap]
rs2907556	0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.86[ASN][1000 genomes]
rs2907558	0.86[ASN][1000 genomes]
rs2907559	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.94[YRI][hapmap];0.86[ASN][1000 genomes]
rs2907567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907569	0.85[ASN][1000 genomes]
rs2907570	0.84[ASN][1000 genomes]
rs2907573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907575	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2907576	0.83[ASN][1000 genomes]
rs2907577	0.83[ASN][1000 genomes]
rs2907578	0.85[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.81[LWK][hapmap];0.87[TSI][hapmap];0.83[ASN][1000 genomes]
rs2907580	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907582	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2907585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2927373	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2960659	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2960660	0.83[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap];0.89[TSI][hapmap]
rs2960662	0.83[CHD][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap]
rs2960664	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2960665	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2960668	0.86[ASN][1000 genomes]
rs2960670	0.86[ASN][1000 genomes]
rs2960675	0.86[ASN][1000 genomes]
rs2960676	0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap]
rs2960678	0.92[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2960679	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.90[ASN][1000 genomes]
rs2960680	0.92[JPT][hapmap]
rs2960729	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs4430419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4447088	0.85[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs6585366	0.85[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs723471	0.84[JPT][hapmap]
rs725556	0.87[CHD][hapmap];0.84[JPT][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs758579	0.83[CHD][hapmap];0.92[JPT][hapmap]
rs875377	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117607600-117621400	Weak transcription	Aorta	Aorta
2	chr10:117612200-117628000	Weak transcription	Ovary	ovary
3	chr10:117615000-117620800	Weak transcription	HSMM	muscle
4	chr10:117616400-117621000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:117616600-117621600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:117616600-117625200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:117616800-117617600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:117616800-117621000	Weak transcription	NHEK	skin
9	chr10:117617200-117617600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:117617400-117617600	Enhancers	NHDF-Ad	bronchial
11	chr10:117617400-117617600	Enhancers	Osteobl	bone

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