Variant report

Variant	rs2804160
Chromosome Location	chr10:117488752-117488753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117479183..117481375-chr10:117486927..117488986,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10490919	0.88[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885772	0.87[JPT][hapmap]
rs10885789	0.88[JPT][hapmap]
rs10885797	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885799	0.89[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885801	0.88[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885806	0.81[EUR][1000 genomes]
rs10885810	0.81[CEU][hapmap]
rs11197429	0.89[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1157117	0.84[CEU][hapmap]
rs12219077	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12777802	0.86[JPT][hapmap]
rs12784311	0.93[JPT][hapmap]
rs1547948	0.81[JPT][hapmap]
rs2243740	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2286631	0.87[JPT][hapmap]
rs2420109	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420110	0.96[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2420111	0.89[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2420116	0.82[JPT][hapmap]
rs2532709	0.89[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2804161	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2960715	0.89[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4529823	0.81[JPT][hapmap]
rs4600124	0.88[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4751930	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6585362	0.82[JPT][hapmap]
rs7923360	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs992888	0.88[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117471000-117490600	Weak transcription	Aorta	Aorta

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