Variant report

Variant	rs7896291
Chromosome Location	chr10:117468517-117468518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:117424165..117428344-chr10:117465614..117471494,6	MCF-7	breast:
2	chr10:117467828..117469651-chr10:117471343..117473666,2	MCF-7	breast:
3	chr10:117451534..117452432-chr10:117467796..117468585,2	MCF-7	breast:
4	chr10:117423917..117424881-chr10:117467818..117468687,3	MCF-7	breast:
5	chr10:117463557..117466406-chr10:117466750..117469424,2	MCF-7	breast:
6	chr10:117449308..117451015-chr10:117467572..117469673,2	MCF-7	breast:
7	chr10:117468027..117471001-chr10:117471379..117473007,2	MCF-7	breast:
8	chr10:117466869..117469113-chr10:118028705..118031024,3	MCF-7	breast:
9	chr10:117423967..117424843-chr10:117468066..117468659,2	MCF-7	breast:
10	chr10:117464181..117466905-chr10:117467823..117469995,2	MCF-7	breast:
11	chr10:117421992..117426974-chr10:117467118..117472405,7	MCF-7	breast:

No data

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10159619	0.86[EUR][1000 genomes]
rs10159620	0.86[EUR][1000 genomes]
rs10159623	0.86[EUR][1000 genomes]
rs10430684	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10430685	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10430686	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10510011	0.91[EUR][1000 genomes]
rs10736242	0.91[EUR][1000 genomes]
rs10749178	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10749179	0.91[EUR][1000 genomes]
rs10749180	0.86[EUR][1000 genomes]
rs10787587	0.88[EUR][1000 genomes]
rs10787588	0.88[EUR][1000 genomes]
rs10787589	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10787590	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10787591	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10787592	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10787593	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10787594	0.86[EUR][1000 genomes]
rs10787595	0.86[EUR][1000 genomes]
rs10787596	0.85[EUR][1000 genomes]
rs10787597	0.86[EUR][1000 genomes]
rs10885769	0.87[EUR][1000 genomes]
rs10885770	0.87[EUR][1000 genomes]
rs10885771	0.91[EUR][1000 genomes]
rs10885772	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10885773	0.91[EUR][1000 genomes]
rs10885774	0.92[EUR][1000 genomes]
rs10885775	0.92[EUR][1000 genomes]
rs10885776	0.90[EUR][1000 genomes]
rs10885778	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885779	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10885780	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885781	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885782	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10885783	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10885784	0.89[EUR][1000 genomes]
rs10885785	0.89[EUR][1000 genomes]
rs10885786	0.91[EUR][1000 genomes]
rs10885787	0.91[EUR][1000 genomes]
rs10885788	0.91[EUR][1000 genomes]
rs10885789	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10885790	0.90[EUR][1000 genomes]
rs10885791	0.85[EUR][1000 genomes]
rs10885792	0.84[EUR][1000 genomes]
rs10885793	0.86[EUR][1000 genomes]
rs10885794	0.86[EUR][1000 genomes]
rs10885795	0.86[EUR][1000 genomes]
rs11197410	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197418	0.91[EUR][1000 genomes]
rs11197419	0.91[EUR][1000 genomes]
rs11197420	0.86[EUR][1000 genomes]
rs11197421	0.86[EUR][1000 genomes]
rs11197422	0.86[EUR][1000 genomes]
rs2286631	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420102	0.81[EUR][1000 genomes]
rs2420103	0.88[EUR][1000 genomes]
rs2420104	0.88[EUR][1000 genomes]
rs2420107	0.91[EUR][1000 genomes]
rs2420108	0.92[EUR][1000 genomes]
rs2532721	0.92[AFR][1000 genomes]
rs2804157	0.91[AFR][1000 genomes]
rs2804159	0.91[AFR][1000 genomes]
rs2901058	0.87[EUR][1000 genomes]
rs2901059	0.92[EUR][1000 genomes]
rs34597035	0.87[EUR][1000 genomes]
rs4411216	0.86[EUR][1000 genomes]
rs4481944	0.91[EUR][1000 genomes]
rs4751925	0.90[EUR][1000 genomes]
rs4751926	0.86[EUR][1000 genomes]
rs4751927	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4751928	0.85[EUR][1000 genomes]
rs4751929	0.86[EUR][1000 genomes]
rs6585351	0.90[EUR][1000 genomes]
rs7067647	0.91[EUR][1000 genomes]
rs7069993	0.91[EUR][1000 genomes]
rs7076841	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7076927	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7077305	0.89[EUR][1000 genomes]
rs7077515	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7086114	0.92[EUR][1000 genomes]
rs7086132	0.92[EUR][1000 genomes]
rs7093582	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7095116	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7894330	0.86[EUR][1000 genomes]
rs7894804	0.86[EUR][1000 genomes]
rs7897855	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7900426	0.90[EUR][1000 genomes]
rs7900516	0.80[EUR][1000 genomes]
rs7900551	0.92[EUR][1000 genomes]
rs7902827	0.93[EUR][1000 genomes]
rs7904246	0.91[EUR][1000 genomes]
rs7904383	0.91[EUR][1000 genomes]
rs7904786	0.91[EUR][1000 genomes]
rs7908611	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7908993	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7909272	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7913341	0.91[EUR][1000 genomes]
rs7914798	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7915109	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7917642	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8181366	0.86[EUR][1000 genomes]
rs8181393	0.86[EUR][1000 genomes]
rs992888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117466000-117470000	Weak transcription	HSMMtube	muscle

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