Variant report
| Variant | rs2532721 |
|---|---|
| Chromosome Location | chr10:117468548-117468549 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:11)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:11 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:117424165..117428344-chr10:117465614..117471494,6 | MCF-7 | breast: | |
| 2 | chr10:117467828..117469651-chr10:117471343..117473666,2 | MCF-7 | breast: | |
| 3 | chr10:117451534..117452432-chr10:117467796..117468585,2 | MCF-7 | breast: | |
| 4 | chr10:117423917..117424881-chr10:117467818..117468687,3 | MCF-7 | breast: | |
| 5 | chr10:117463557..117466406-chr10:117466750..117469424,2 | MCF-7 | breast: | |
| 6 | chr10:117449308..117451015-chr10:117467572..117469673,2 | MCF-7 | breast: | |
| 7 | chr10:117468027..117471001-chr10:117471379..117473007,2 | MCF-7 | breast: | |
| 8 | chr10:117466869..117469113-chr10:118028705..118031024,3 | MCF-7 | breast: | |
| 9 | chr10:117423967..117424843-chr10:117468066..117468659,2 | MCF-7 | breast: | |
| 10 | chr10:117464181..117466905-chr10:117467823..117469995,2 | MCF-7 | breast: | |
| 11 | chr10:117421992..117426974-chr10:117467118..117472405,7 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10885779 | 0.93[AFR][1000 genomes] |
| rs10885789 | 0.91[AFR][1000 genomes] |
| rs11197409 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11197410 | 0.81[AFR][1000 genomes] |
| rs11197416 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1981663 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2068463 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2254619 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2420106 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2532718 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2532724 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2804146 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2804157 | 0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2804159 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67121540 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7093582 | 0.80[AFR][1000 genomes] |
| rs72826811 | 0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7896291 | 0.92[AFR][1000 genomes] |
| rs7897855 | 0.85[AFR][1000 genomes] |
| rs7908611 | 0.80[AFR][1000 genomes] |
| rs992888 | 0.91[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117466000-117470000 | Weak transcription | HSMMtube | muscle |
