Variant report

Variant	rs11197416
Chromosome Location	chr10:117474955-117474956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117464169..117466557-chr10:117473418..117475257,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1034938	1.00[JPT][hapmap]
rs10490917	1.00[CHB][hapmap]
rs11197409	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1476795	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1541466	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1544543	1.00[CHB][hapmap]
rs1547947	0.87[CHD][hapmap]
rs17093700	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1860402	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1981663	0.87[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2024179	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2068463	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2254619	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2420106	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2420117	1.00[CHB][hapmap]
rs2532718	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532721	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532724	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2804146	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2804157	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804159	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804164	1.00[JPT][hapmap]
rs2860341	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2901061	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2901094	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2907543	1.00[CHB][hapmap]
rs2907557	1.00[CHB][hapmap]
rs2960641	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2960657	1.00[CHB][hapmap]
rs2960674	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2960686	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2960688	1.00[CHB][hapmap]
rs2960689	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2960690	1.00[CHB][hapmap]
rs2960722	1.00[CHB][hapmap]
rs6585363	1.00[CHB][hapmap]
rs6585364	1.00[CHB][hapmap]
rs67121540	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826811	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11197416	EIF3A	cis	parietal	SCAN
rs11197416	NANOS1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117471000-117490600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links