Variant report

Variant	rs1544543
Chromosome Location	chr10:117615483-117615484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10490917	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs11197416	1.00[CHB][hapmap]
rs11592116	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598532	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360079	0.80[ASN][1000 genomes]
rs1476795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1547947	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17093700	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17269525	0.85[JPT][hapmap]
rs17354680	0.85[JPT][hapmap]
rs1860402	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1981662	0.80[ASN][1000 genomes]
rs2024179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2244439	0.80[ASN][1000 genomes]
rs2254619	1.00[CHB][hapmap]
rs2420106	1.00[CHB][hapmap]
rs2420114	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2420117	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420118	0.82[EUR][1000 genomes]
rs2420120	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420123	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490719	0.80[ASN][1000 genomes]
rs2532701	0.80[ASN][1000 genomes]
rs2532704	0.80[ASN][1000 genomes]
rs2804146	1.00[CHB][hapmap]
rs2804166	0.80[ASN][1000 genomes]
rs2860341	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2860364	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2901061	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2901094	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2907525	0.80[ASN][1000 genomes]
rs2907543	1.00[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs2907548	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907560	0.91[EUR][1000 genomes]
rs2907562	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907571	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907574	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907579	0.92[ASN][1000 genomes]
rs2907581	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960641	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2960656	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960669	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960673	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960685	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960686	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960688	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960689	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960690	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs2960692	0.80[ASN][1000 genomes]
rs2960722	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs3110773	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6585363	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs6585364	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs72830991	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830992	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117607600-117621400	Weak transcription	Aorta	Aorta
2	chr10:117612200-117616600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:117612200-117628000	Weak transcription	Ovary	ovary
4	chr10:117614200-117615600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr10:117614600-117615800	Weak transcription	Esophagus	oesophagus
6	chr10:117614600-117616000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:117614600-117616000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:117614600-117616200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:117615000-117616200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:117615000-117616200	Weak transcription	NHDF-Ad	bronchial
11	chr10:117615000-117616800	Enhancers	NHEK	skin
12	chr10:117615000-117617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:117615000-117617400	Weak transcription	Osteobl	bone
14	chr10:117615000-117620800	Weak transcription	HSMM	muscle
15	chr10:117615200-117616000	Weak transcription	HMEC	breast
16	chr10:117615400-117616200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links