Variant report

Variant	rs1981662
Chromosome Location	chr10:117507269-117507270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117505649..117508241-chr10:117509023..117511688,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1034938	0.82[EUR][1000 genomes]
rs10490917	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592116	0.80[ASN][1000 genomes]
rs11598532	0.80[ASN][1000 genomes]
rs12360079	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476795	0.80[ASN][1000 genomes]
rs1544543	0.80[ASN][1000 genomes]
rs1547947	0.81[ASN][1000 genomes]
rs17093700	0.84[ASN][1000 genomes]
rs1860402	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244439	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420114	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420117	0.85[ASN][1000 genomes]
rs2420120	0.81[ASN][1000 genomes]
rs2490719	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532701	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804164	0.86[EUR][1000 genomes]
rs2804165	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2804166	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860341	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860364	0.81[ASN][1000 genomes]
rs2901061	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907525	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907543	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907571	0.81[ASN][1000 genomes]
rs2907574	0.81[ASN][1000 genomes]
rs2907579	0.81[ASN][1000 genomes]
rs2907581	0.80[ASN][1000 genomes]
rs2960641	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960656	0.80[ASN][1000 genomes]
rs2960657	0.80[ASN][1000 genomes]
rs2960685	0.81[ASN][1000 genomes]
rs2960686	0.81[ASN][1000 genomes]
rs2960688	0.81[ASN][1000 genomes]
rs2960689	0.81[ASN][1000 genomes]
rs2960690	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960692	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960722	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110773	0.81[ASN][1000 genomes]
rs6585363	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6585364	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72830991	0.80[ASN][1000 genomes]
rs72830992	0.80[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117489400-117520800	Weak transcription	HSMM	muscle
2	chr10:117490800-117509600	Weak transcription	Aorta	Aorta
3	chr10:117506600-117507800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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