Variant report

Variant	rs2804164
Chromosome Location	chr10:117490762-117490763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1034938	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490917	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs10787611	0.85[CHB][hapmap]
rs10787612	0.85[CHB][hapmap]
rs11197416	1.00[JPT][hapmap]
rs12360079	0.83[EUR][1000 genomes]
rs1476795	0.81[GIH][hapmap];0.82[TSI][hapmap]
rs1541466	0.81[GIH][hapmap];0.89[TSI][hapmap]
rs1547947	0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17093700	0.81[GIH][hapmap];0.82[TSI][hapmap]
rs1860402	0.93[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs1981662	0.86[EUR][1000 genomes]
rs1981663	1.00[JPT][hapmap]
rs2024179	0.81[GIH][hapmap];0.89[TSI][hapmap]
rs2068463	1.00[JPT][hapmap]
rs2244439	0.89[EUR][1000 genomes]
rs2249295	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs2254619	1.00[JPT][hapmap]
rs2420106	1.00[JPT][hapmap]
rs2420114	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2490719	0.86[EUR][1000 genomes]
rs2532701	0.90[EUR][1000 genomes]
rs2532704	0.86[EUR][1000 genomes]
rs2615870	0.85[CHB][hapmap]
rs2615874	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs2615884	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs2615889	1.00[CHB][hapmap]
rs2620961	0.85[CHB][hapmap];1.00[CHD][hapmap]
rs2804165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs2804166	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2860341	0.81[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2901061	0.86[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs2907525	0.90[EUR][1000 genomes]
rs2907543	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2907560	1.00[CHB][hapmap]
rs2907579	0.81[EUR][1000 genomes]
rs2960641	0.81[CEU][hapmap];0.91[GIH][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2960674	0.81[GIH][hapmap];0.89[TSI][hapmap]
rs2960686	0.81[GIH][hapmap];0.89[TSI][hapmap]
rs2960689	0.81[GIH][hapmap];0.93[TSI][hapmap]
rs2960692	0.83[EUR][1000 genomes]
rs2960722	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs6585363	0.82[EUR][1000 genomes]
rs6585364	0.82[EUR][1000 genomes]
rs7100412	0.85[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2804164	ZDHHC6	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117489400-117520800	Weak transcription	HSMM	muscle
2	chr10:117490600-117490800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117490600-117490800	ZNF genes & repeats	Aorta	Aorta

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