Variant report

Variant	rs2860341
Chromosome Location	chr10:117506779-117506780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117505649..117508241-chr10:117509023..117511688,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1034938	0.82[EUR][1000 genomes]
rs10490917	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490988	1.00[CHD][hapmap]
rs11197416	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs11592116	0.80[ASN][1000 genomes]
rs11598532	0.80[ASN][1000 genomes]
rs12360079	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476795	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes]
rs1541466	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs1544543	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1547947	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs17093700	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs17269525	0.82[JPT][hapmap]
rs17269882	0.87[CHD][hapmap]
rs17270580	1.00[CHD][hapmap]
rs17270699	1.00[CHD][hapmap]
rs17354680	0.82[JPT][hapmap]
rs17354968	1.00[CHD][hapmap]
rs1860402	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981662	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981663	0.87[CHD][hapmap]
rs2024179	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs2244439	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249295	0.87[CHD][hapmap]
rs2254619	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2420106	1.00[CHB][hapmap]
rs2420114	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2420120	0.81[ASN][1000 genomes]
rs2490719	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532701	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532704	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615874	0.87[CHD][hapmap]
rs2615884	0.85[CHD][hapmap]
rs2804146	1.00[CHB][hapmap]
rs2804164	0.81[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2804165	0.87[CEU][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2804166	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860364	0.81[ASN][1000 genomes]
rs2901061	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901094	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs2907525	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907543	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2907557	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2907571	0.81[ASN][1000 genomes]
rs2907574	0.81[ASN][1000 genomes]
rs2907579	0.81[ASN][1000 genomes]
rs2907581	0.80[ASN][1000 genomes]
rs2960641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960656	0.80[ASN][1000 genomes]
rs2960657	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2960674	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs2960685	0.81[ASN][1000 genomes]
rs2960686	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[ASN][1000 genomes]
rs2960688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2960689	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.81[ASN][1000 genomes]
rs2960690	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960692	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110773	0.81[ASN][1000 genomes]
rs6585353	0.84[YRI][hapmap]
rs6585363	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6585364	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7084410	0.80[YRI][hapmap]
rs72830991	0.80[ASN][1000 genomes]
rs72830992	0.80[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117489400-117520800	Weak transcription	HSMM	muscle
2	chr10:117490800-117509600	Weak transcription	Aorta	Aorta
3	chr10:117506600-117507800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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