Variant report

Variant	rs17354680
Chromosome Location	chr10:117666131-117666132
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10490917	0.85[JPT][hapmap]
rs10490986	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs10490987	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs10490988	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10787611	0.90[CEU][hapmap]
rs10787612	0.89[CEU][hapmap]
rs1476795	0.82[JPT][hapmap]
rs1541466	0.82[JPT][hapmap]
rs1544543	0.85[JPT][hapmap]
rs1547947	0.82[JPT][hapmap]
rs17093700	0.82[JPT][hapmap]
rs17093758	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17093786	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs17269525	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17269882	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs17269917	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs17270580	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs17270699	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17354968	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1860402	0.82[JPT][hapmap]
rs2024179	0.82[JPT][hapmap]
rs2054533	0.95[CEU][hapmap]
rs2249295	0.95[CEU][hapmap]
rs2420117	0.85[JPT][hapmap]
rs2615870	0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2615874	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2615884	0.89[CEU][hapmap]
rs2615889	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2620959	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs2620960	0.95[CEU][hapmap]
rs2620961	0.89[CEU][hapmap]
rs2860341	0.82[JPT][hapmap]
rs2901061	0.82[JPT][hapmap]
rs2901094	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs2907543	0.85[JPT][hapmap]
rs2907557	0.85[JPT][hapmap]
rs2960641	0.82[JPT][hapmap]
rs2960657	0.85[JPT][hapmap]
rs2960674	0.82[JPT][hapmap]
rs2960686	0.82[JPT][hapmap]
rs2960688	0.85[JPT][hapmap]
rs2960689	0.82[JPT][hapmap]
rs2960690	0.85[JPT][hapmap]
rs2960722	0.85[JPT][hapmap]
rs61622674	0.82[AFR][1000 genomes]
rs6585363	0.85[JPT][hapmap]
rs6585364	0.85[JPT][hapmap]
rs7100412	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs72832833	0.83[ASN][1000 genomes]
rs72832834	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73365707	0.86[AFR][1000 genomes]
rs73365712	0.82[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117657000-117677800	Weak transcription	HSMM	muscle
2	chr10:117658200-117677600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117658200-117695400	Weak transcription	Aorta	Aorta
4	chr10:117662000-117672800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:117662400-117669600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:117662400-117670200	Weak transcription	Ovary	ovary

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