Variant report

Variant	rs2620960
Chromosome Location	chr10:117686855-117686856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1034938	0.85[CHB][hapmap]
rs10490986	0.94[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10490987	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10490988	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs10787611	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10787612	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17093786	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17269525	0.89[CEU][hapmap]
rs17269882	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17269917	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17270580	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17270699	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs17354680	0.95[CEU][hapmap]
rs17354968	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2054533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2249295	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[EUR][1000 genomes]
rs2263622	0.98[EUR][1000 genomes]
rs2615870	0.86[CHB][hapmap]
rs2615874	0.95[CEU][hapmap];0.86[CHB][hapmap]
rs2615880	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2615882	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2615884	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[EUR][1000 genomes]
rs2615889	0.94[CEU][hapmap]
rs2620959	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2620961	0.94[CEU][hapmap];0.86[CHB][hapmap];0.97[EUR][1000 genomes]
rs2901094	0.95[CEU][hapmap]
rs41284364	0.82[EUR][1000 genomes]
rs55782493	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55917752	0.95[EUR][1000 genomes]
rs56045626	0.89[EUR][1000 genomes]
rs57211763	0.95[EUR][1000 genomes]
rs58744761	0.95[EUR][1000 genomes]
rs61319078	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67778998	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67945700	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7100412	0.95[CEU][hapmap];0.86[CHB][hapmap]
rs72832833	0.94[EUR][1000 genomes]
rs72832834	0.89[EUR][1000 genomes]
rs72832836	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73365760	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117658200-117695400	Weak transcription	Aorta	Aorta
2	chr10:117679000-117692800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links