Variant report

Variant	rs2054533
Chromosome Location	chr10:117690999-117691000
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10490986	0.94[CEU][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10490987	1.00[CEU][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10490988	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10787611	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10787612	0.94[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17093786	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17269525	0.89[CEU][hapmap]
rs17269882	1.00[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes]
rs17269917	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17270580	1.00[CEU][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs17270699	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs17354680	0.95[CEU][hapmap]
rs17354968	0.84[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs2249295	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs2263622	0.96[EUR][1000 genomes]
rs2615870	0.86[CHB][hapmap]
rs2615874	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];0.82[TSI][hapmap]
rs2615880	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2615882	0.95[EUR][1000 genomes]
rs2615884	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs2615889	0.94[CEU][hapmap]
rs2620959	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs2620960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2620961	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs2901094	0.95[CEU][hapmap]
rs41284364	0.81[EUR][1000 genomes]
rs55782493	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55917752	0.94[EUR][1000 genomes]
rs56045626	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57211763	0.94[EUR][1000 genomes]
rs58744761	0.94[EUR][1000 genomes]
rs61319078	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67778998	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67945700	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7100412	0.95[CEU][hapmap];0.86[CHB][hapmap]
rs72832833	0.93[EUR][1000 genomes]
rs72832834	0.90[EUR][1000 genomes]
rs72832836	0.92[EUR][1000 genomes]
rs73365760	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2054533	NANOS1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117658200-117695400	Weak transcription	Aorta	Aorta
2	chr10:117679000-117692800	Weak transcription	HSMM	muscle
3	chr10:117690200-117691200	Enhancers	Brain Germinal Matrix	brain

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