Variant report

Variant	rs2620959
Chromosome Location	chr10:117681476-117681477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10490986	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[EUR][1000 genomes]
rs10490987	0.94[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs10490988	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10787611	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10787612	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17093786	0.94[CEU][hapmap];0.82[CHB][hapmap];0.93[EUR][1000 genomes]
rs17269525	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs17269882	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17269917	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17270580	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17270699	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17354680	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs17354968	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs2054533	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs2249295	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs2263622	0.91[EUR][1000 genomes]
rs2615874	0.89[CEU][hapmap]
rs2615880	0.92[EUR][1000 genomes]
rs2615882	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2615884	1.00[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2615889	0.88[CEU][hapmap]
rs2620960	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2620961	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2901094	0.89[CEU][hapmap]
rs41284364	0.88[EUR][1000 genomes]
rs55782493	0.97[EUR][1000 genomes]
rs55917752	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56045626	0.91[EUR][1000 genomes]
rs57211763	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58744761	0.97[EUR][1000 genomes]
rs61319078	0.93[EUR][1000 genomes]
rs67778998	0.98[EUR][1000 genomes]
rs67945700	0.99[EUR][1000 genomes]
rs7100412	0.90[CEU][hapmap]
rs72832833	0.87[EUR][1000 genomes]
rs72832834	0.91[EUR][1000 genomes]
rs72832836	0.94[EUR][1000 genomes]
rs73365760	0.97[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117658200-117695400	Weak transcription	Aorta	Aorta
2	chr10:117679000-117692800	Weak transcription	HSMM	muscle
3	chr10:117681000-117681600	Enhancers	NHEK	skin
4	chr10:117681000-117681800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:117681200-117681600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:117681200-117682200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:117681400-117681600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:117681400-117681800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:117681400-117682400	Enhancers	A549	lung

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