Variant report

Variant	rs17269882
Chromosome Location	chr10:117671419-117671420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10490986	0.94[CEU][hapmap];0.82[CHB][hapmap];0.94[EUR][1000 genomes]
rs10490987	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10490988	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10787611	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs10787612	0.94[CEU][hapmap];0.84[GIH][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs1476795	0.87[CHD][hapmap]
rs1541466	0.87[CHD][hapmap]
rs1547947	0.87[CHD][hapmap]
rs17093700	0.87[CHD][hapmap]
rs17093786	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[EUR][1000 genomes]
rs17094083	1.00[ASW][hapmap]
rs17269525	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17269917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17270580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17270699	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17354680	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs17354968	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[TSI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1860402	0.87[CHD][hapmap]
rs2024179	0.87[CHD][hapmap]
rs2054533	1.00[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes]
rs2249295	1.00[CEU][hapmap];0.83[GIH][hapmap];0.89[EUR][1000 genomes]
rs2254619	0.87[CHD][hapmap]
rs2263622	0.89[EUR][1000 genomes]
rs2615874	0.95[CEU][hapmap]
rs2615880	0.92[EUR][1000 genomes]
rs2615882	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2615884	0.94[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2615889	0.94[CEU][hapmap]
rs2620959	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2620960	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2620961	0.94[CEU][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2860341	0.87[CHD][hapmap]
rs2901061	0.87[CHD][hapmap]
rs2901094	0.95[CEU][hapmap];0.87[CHD][hapmap];0.85[MEX][hapmap]
rs2960641	0.87[CHD][hapmap]
rs2960674	0.87[CHD][hapmap]
rs2960686	0.87[CHD][hapmap]
rs2960689	0.87[CHD][hapmap]
rs3781514	1.00[ASW][hapmap]
rs41284364	0.83[EUR][1000 genomes]
rs55782493	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55917752	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56045626	0.92[EUR][1000 genomes]
rs57211763	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58744761	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61319078	0.98[EUR][1000 genomes]
rs67778998	0.94[EUR][1000 genomes]
rs67945700	0.94[EUR][1000 genomes]
rs7100412	0.95[CEU][hapmap]
rs72832833	0.94[EUR][1000 genomes]
rs72832834	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72832836	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73365760	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8416	1.00[ASW][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17269882	NANOS1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117657000-117677800	Weak transcription	HSMM	muscle
2	chr10:117658200-117677600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117658200-117695400	Weak transcription	Aorta	Aorta
4	chr10:117662000-117672800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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