Variant report

Variant	rs1476795
Chromosome Location	chr10:117616187-117616188
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10490917	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10490988	1.00[CHD][hapmap]
rs11197416	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs11592116	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598532	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360079	0.80[ASN][1000 genomes]
rs1541466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1544543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547947	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17093700	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17269525	0.82[JPT][hapmap]
rs17269882	0.87[CHD][hapmap]
rs17270580	1.00[CHD][hapmap]
rs17270699	1.00[CHD][hapmap]
rs17354680	0.82[JPT][hapmap]
rs17354968	1.00[CHD][hapmap]
rs1860402	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes]
rs1981662	0.80[ASN][1000 genomes]
rs1981663	0.87[CHD][hapmap]
rs2024179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2244439	0.80[ASN][1000 genomes]
rs2249295	0.87[CHD][hapmap]
rs2254619	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2420106	1.00[CHB][hapmap]
rs2420114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2420117	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420118	0.82[EUR][1000 genomes]
rs2420120	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420123	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490719	0.80[ASN][1000 genomes]
rs2532701	0.80[ASN][1000 genomes]
rs2532704	0.80[ASN][1000 genomes]
rs2615874	0.87[CHD][hapmap]
rs2615884	0.85[CHD][hapmap]
rs2804146	1.00[CHB][hapmap]
rs2804164	0.81[GIH][hapmap];0.82[TSI][hapmap]
rs2804166	0.80[ASN][1000 genomes]
rs2860341	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes]
rs2860364	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2901061	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes]
rs2901094	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2907525	0.80[ASN][1000 genomes]
rs2907543	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2907548	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907560	0.91[EUR][1000 genomes]
rs2907562	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907571	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907574	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907579	0.92[ASN][1000 genomes]
rs2907581	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960641	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes]
rs2960656	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960669	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960673	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960685	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960686	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960688	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960689	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960690	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2960692	0.80[ASN][1000 genomes]
rs2960722	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3110773	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6585363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6585364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6585367	0.82[AFR][1000 genomes]
rs72830991	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830992	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1476795	ADRB1	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117607600-117621400	Weak transcription	Aorta	Aorta
2	chr10:117612200-117616600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:117612200-117628000	Weak transcription	Ovary	ovary
4	chr10:117614600-117616200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:117615000-117616200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:117615000-117616200	Weak transcription	NHDF-Ad	bronchial
7	chr10:117615000-117616800	Enhancers	NHEK	skin
8	chr10:117615000-117617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:117615000-117617400	Weak transcription	Osteobl	bone
10	chr10:117615000-117620800	Weak transcription	HSMM	muscle
11	chr10:117615400-117616200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:117615600-117616800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:117616000-117616200	Enhancers	Esophagus	oesophagus
14	chr10:117616000-117616200	Enhancers	HMEC	breast
15	chr10:117616000-117616400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:117616000-117616400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:117616000-117616400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr10:117616000-117616400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:117616000-117616400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:117616000-117616600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:117616000-117616600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:117616000-117616600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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