Variant report

Variant	rs2901094
Chromosome Location	chr10:117642452-117642453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10490917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10490986	0.89[CEU][hapmap]
rs10490987	0.95[CEU][hapmap]
rs10490988	0.84[CEU][hapmap];1.00[CHD][hapmap]
rs10787611	0.89[CEU][hapmap]
rs10787612	0.89[CEU][hapmap]
rs11197416	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs11592116	0.88[ASN][1000 genomes]
rs11598532	0.88[ASN][1000 genomes]
rs1476795	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1541466	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1544543	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs1547947	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17093700	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17093786	0.95[CEU][hapmap]
rs17269525	0.95[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs17269882	0.95[CEU][hapmap];0.87[CHD][hapmap];0.85[MEX][hapmap]
rs17269917	0.94[CEU][hapmap]
rs17270580	0.95[CEU][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap]
rs17270699	0.89[CEU][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap]
rs17354680	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs17354968	1.00[CHD][hapmap]
rs1860402	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2024179	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2054533	0.95[CEU][hapmap]
rs2249295	0.95[CEU][hapmap];0.87[CHD][hapmap]
rs2254619	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2420106	1.00[CHB][hapmap]
rs2420114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2420117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2420120	0.81[ASN][1000 genomes]
rs2420123	0.84[ASN][1000 genomes]
rs2615870	0.88[EUR][1000 genomes]
rs2615874	1.00[CEU][hapmap];0.87[CHD][hapmap];0.88[EUR][1000 genomes]
rs2615884	0.89[CEU][hapmap];0.85[CHD][hapmap]
rs2615889	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2620959	0.89[CEU][hapmap]
rs2620960	0.95[CEU][hapmap]
rs2620961	0.89[CEU][hapmap]
rs2860341	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs2860364	0.81[ASN][1000 genomes]
rs2901061	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs2907543	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2907548	0.84[ASN][1000 genomes]
rs2907557	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2907562	0.84[ASN][1000 genomes]
rs2907571	0.81[ASN][1000 genomes]
rs2907574	0.81[ASN][1000 genomes]
rs2907579	0.81[ASN][1000 genomes]
rs2907581	0.88[ASN][1000 genomes]
rs2960641	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs2960656	0.88[ASN][1000 genomes]
rs2960657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2960669	0.84[ASN][1000 genomes]
rs2960673	0.84[ASN][1000 genomes]
rs2960674	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2960685	0.81[ASN][1000 genomes]
rs2960686	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2960688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2960689	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2960690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2960722	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3110773	0.81[ASN][1000 genomes]
rs6585363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6585364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7100412	1.00[CEU][hapmap]
rs72830991	0.88[ASN][1000 genomes]
rs72830992	0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2901094	GRK5	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117634000-117657800	Weak transcription	Aorta	Aorta
2	chr10:117636800-117644000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:117639800-117642600	Weak transcription	Fetal Stomach	stomach
4	chr10:117642400-117642600	Enhancers	Brain Germinal Matrix	brain

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