Variant report
| Variant | rs17269525 |
|---|---|
| Chromosome Location | chr10:117661221-117661222 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:48)
| rs_ID | r2[population] |
|---|---|
| rs10490917 | 0.85[JPT][hapmap] |
| rs10490986 | 0.94[CEU][hapmap];0.82[CHB][hapmap] |
| rs10490987 | 0.89[CEU][hapmap];0.82[CHB][hapmap] |
| rs10490988 | 0.89[CEU][hapmap];1.00[CHB][hapmap] |
| rs10787611 | 0.94[CEU][hapmap] |
| rs10787612 | 0.94[CEU][hapmap] |
| rs1476795 | 0.82[JPT][hapmap] |
| rs1541466 | 0.82[JPT][hapmap] |
| rs1544543 | 0.85[JPT][hapmap] |
| rs1547947 | 0.82[JPT][hapmap] |
| rs17093700 | 0.82[JPT][hapmap] |
| rs17093786 | 0.89[CEU][hapmap];0.82[CHB][hapmap] |
| rs17269882 | 0.89[CEU][hapmap];1.00[CHB][hapmap] |
| rs17269917 | 0.89[CEU][hapmap];1.00[CHB][hapmap] |
| rs17270580 | 0.89[CEU][hapmap];1.00[CHB][hapmap] |
| rs17270699 | 0.84[CEU][hapmap];1.00[CHB][hapmap] |
| rs17354680 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17354968 | 1.00[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs1860402 | 0.82[JPT][hapmap] |
| rs2024179 | 0.82[JPT][hapmap] |
| rs2054533 | 0.89[CEU][hapmap] |
| rs2249295 | 0.89[CEU][hapmap] |
| rs2420117 | 0.85[JPT][hapmap] |
| rs2615870 | 0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2615874 | 0.95[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2615884 | 0.94[CEU][hapmap] |
| rs2615889 | 0.94[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2620959 | 0.94[CEU][hapmap];1.00[CHB][hapmap] |
| rs2620960 | 0.89[CEU][hapmap] |
| rs2620961 | 0.94[CEU][hapmap] |
| rs2860341 | 0.82[JPT][hapmap] |
| rs2901061 | 0.82[JPT][hapmap] |
| rs2901094 | 0.95[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes] |
| rs2907543 | 0.85[JPT][hapmap] |
| rs2907557 | 0.85[JPT][hapmap] |
| rs2960641 | 0.82[JPT][hapmap] |
| rs2960657 | 0.85[JPT][hapmap] |
| rs2960674 | 0.82[JPT][hapmap] |
| rs2960686 | 0.82[JPT][hapmap] |
| rs2960688 | 0.85[JPT][hapmap] |
| rs2960689 | 0.82[JPT][hapmap] |
| rs2960690 | 0.85[JPT][hapmap] |
| rs2960722 | 0.85[JPT][hapmap] |
| rs6585363 | 0.85[JPT][hapmap] |
| rs6585364 | 0.85[JPT][hapmap] |
| rs7100412 | 0.95[CEU][hapmap];0.86[JPT][hapmap] |
| rs72832833 | 0.83[ASN][1000 genomes] |
| rs72832834 | 0.97[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117657000-117677800 | Weak transcription | HSMM | muscle |
| 2 | chr10:117658200-117677600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 3 | chr10:117658200-117695400 | Weak transcription | Aorta | Aorta |
