Variant report

Variant	rs2960657
Chromosome Location	chr10:117621129-117621130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10490917	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11197416	1.00[CHB][hapmap]
rs11592116	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360079	0.80[ASN][1000 genomes]
rs1476795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1544543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547947	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17093700	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17269525	0.85[JPT][hapmap]
rs17354680	0.85[JPT][hapmap]
rs1860402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1981662	0.80[ASN][1000 genomes]
rs2024179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2068463	0.82[JPT][hapmap]
rs2244439	0.80[ASN][1000 genomes]
rs2254619	1.00[CHB][hapmap]
rs2420106	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2420114	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2420117	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420118	0.82[EUR][1000 genomes]
rs2420120	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420123	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490719	0.80[ASN][1000 genomes]
rs2532701	0.80[ASN][1000 genomes]
rs2532704	0.80[ASN][1000 genomes]
rs2804146	1.00[CHB][hapmap]
rs2804166	0.80[ASN][1000 genomes]
rs2860341	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2860364	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2901061	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2901094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2907525	0.80[ASN][1000 genomes]
rs2907543	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2907548	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907560	0.91[EUR][1000 genomes]
rs2907562	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907571	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907574	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2907579	0.92[ASN][1000 genomes]
rs2907581	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960641	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2960656	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960669	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960673	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2960685	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960686	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960688	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960689	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960690	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2960692	0.80[ASN][1000 genomes]
rs2960722	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3110773	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6585363	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6585364	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6585368	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs6585369	0.89[AFR][1000 genomes]
rs6585370	0.89[AFR][1000 genomes]
rs72830991	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117607600-117621400	Weak transcription	Aorta	Aorta
2	chr10:117612200-117628000	Weak transcription	Ovary	ovary
3	chr10:117616600-117621600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:117616600-117625200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:117620800-117621400	Enhancers	HSMM	muscle
6	chr10:117620800-117622600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:117621000-117621800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:117621000-117621800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:117621000-117622000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:117621000-117622000	Enhancers	NHEK	skin

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