Variant report

Variant	rs2254619
Chromosome Location	chr10:117486763-117486764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1034938	1.00[JPT][hapmap]
rs10490917	1.00[CHB][hapmap]
rs11197409	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11197416	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1476795	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1541466	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1544543	1.00[CHB][hapmap]
rs1547947	1.00[CHD][hapmap]
rs17093700	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17269882	0.87[CHD][hapmap]
rs17354968	1.00[CHD][hapmap]
rs1860402	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1981663	0.87[CEU][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2024179	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2068463	1.00[JPT][hapmap]
rs2249295	0.87[CHD][hapmap]
rs2420106	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2420114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2420117	1.00[CHB][hapmap]
rs2532718	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532721	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2615874	0.87[CHD][hapmap]
rs2615884	0.85[CHD][hapmap]
rs2804146	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2804157	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2804159	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2804164	1.00[JPT][hapmap]
rs2860341	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2901061	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2901094	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2907543	1.00[CHB][hapmap]
rs2907557	1.00[CHB][hapmap]
rs2960641	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2960657	1.00[CHB][hapmap]
rs2960674	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2960686	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2960688	1.00[CHB][hapmap]
rs2960689	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2960690	1.00[CHB][hapmap]
rs2960722	1.00[CHB][hapmap]
rs6585363	1.00[CHB][hapmap]
rs6585364	1.00[CHB][hapmap]
rs67121540	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72826811	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117471000-117490600	Weak transcription	Aorta	Aorta
2	chr10:117486200-117486800	Active TSS	Pancreatic Islets	Pancreatic Islet

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